Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06514 ATGTCTTCATCTTATCCTGTTCTTCCCTCTTCCTCTGTGCAGGCTGCATCAATAAATTCTAACATCAGAAATGCTGGGCACATGTTTTCAACCCCTGCTGGATGCCCTGATGGCATCCCTTTTTCTTCTGTTTCAGAAATACATTCAACAACATTCAGTTCTCACCCTCAAGGAAATGATGATATTTCCTGGGAACCAGATCTGTTTCAGGATATTCAGTTTCCTGATAATGTTTCCATCCAGAATGATCATGTGGACTACAATGCTTCTTACATATCTAGTGACAATGCCAAAACAAATGATTTTGGGGAGTGGGTTGAGCAGTTATTGTCAGGTGATGATTCTCCTCACCCAAATTGGAGTCAATTTGTCAGTGATGATAATGTAGCTGAACCAAAATCCAAGGGTGCAGGAATTTATCCTTCTCTGTTGATGCAGGAAACCCAGGTTTCACAACAGCAGCATGTACCTTCTAGAGAAGTTAGTGATCTTCCTAACTCAGTGCCAAGTGCACCACAAACTAAACCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAGGCAGTCAATAAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAACCTGATGAGAGTTGAAGGCCTTACCATTTATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAATCATCAGAAGGTATGTGTAAGTCTATATAG 735 0.4204 MSSSYPVLPSSSVQAASINSNIRNAGHMFSTPAGCPDGIPFSSVSEIHSTTFSSHPQGNDDISWEPDLFQDIQFPDNVSIQNDHVDYNASYISSDNAKTNDFGEWVEQLLSGDDSPHPNWSQFVSDDNVAEPKSKGAGIYPSLLMQETQVSQQQHVPSREVSDLPNSVPSAPQTKPRMRWTPELHEAFVEAVNKLGGSEKATPKGVLNLMRVEGLTIYHVKSHLQKYRTARYKPESSEGMCKSI. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06514 244 Pfam Myb-like DNA-binding domain 177 228 IPR001005 -
Seca7g06514 244 MobiDBLite consensus disorder prediction 148 174 - -
Seca7g06514 244 Gene3D - 174 233 - -
Seca7g06514 244 MobiDBLite consensus disorder prediction 148 176 - -
Seca7g06514 244 FunFam Myb family transcription factor 174 232 - -
Seca7g06514 244 NCBIfam myb-like DNA-binding domain, SHAQKYF class 175 229 IPR006447 GO:0003677
Seca7g06514 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 232 IPR017930 -
Seca7g06514 244 SUPERFAMILY Homeodomain-like 173 229 IPR009057 -
Seca7g06514 244 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 151 238 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06514 Seca-Chr7 166794208 166797317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06514 49 244 G2-like Transcription Factor Family AT5G29000 45.771 2.81e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca7g06514 Myb_DNA-binding 4.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06514 - - gmx:100813604 298.516