Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06507 ATGGTAAGAACCAGTTTGCTCGAATCTCTTCCCTCCTCGCTCCTCGTTCGCAAATCCGCCAAACAATGCAAGGCTCGCTGGTACGAGTGGCTCGATCCTTCCATTAAGAAGACTGAGTGGACTAGAGAAGAGGATGAGAAACTGCTTCATCTTGCTAAGCTTATGCCCACACAGTGGAGAACAATTGCTCCCATTGTAGGTCGTACTCCTTCCCAGTGCCTTGAGAGGTATGAGAAGCTCCTTGATGCAGCTTGTGTAAAGGATGACAACTATGAACCTGGTGATGATCCTCGTAAATTGCGCCCTGGGGAGATTGATCCAAACCCAGAGTCAAAACCTGCACGTCCAGATCCAGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGAACGAGCCCGGTTAGCCAACACAAAGGGCAAGAAAGCAAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCCTCTTTACAAAAAAAGAGGGAGCTCAAGGCTGCTGGAATTGATATCAGGCACCGGAAGAGGAAAAGGAAAGGGATAGATTACAATGCAGAGATTCCATTTGAGAAGAGGCCCCCTCCAGGGTATTTTGATGTTGCTGGTGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTATTACAATTGAAGAACTCGAGGGAAAAAGGAGGGTTGATGTTGAGGCACACTTGAGAAAGCATGACGTTGCAAAAAATAAAATTGCACAAAGGCAAGATGCACCGTCTGCTATACTGCATGCCAACCAACTAAATGACCCAGAAGCAGTAAGAAAGAAGTCTAAACTGATGCTTCCGCCACCCCAGATTTCTGATCAGGAATTGGATGAAATTGCAAGGTTGGGTTATGCCAGTGACCTTGCAGGGAGTGAGGAACTTGCAGAAGGTAGTGGCGCAACACGTGCTCTTCTGGCTAATTATGCACAAACACTTGGCCGAGGAATGACTCCTTTACGAACCCCTCAGAGAACACCAGCTGGTAAAGGATATGCCATCATGATGGAATCTGAAAATCTGGCCAGGTTGAGGGAGTCTCAGACACCATTGTTAGGAGGAGAGAACCCAGAGTTGCATCCTTAA 1110 0.473 MVRTSLLESLPSSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEERARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRHRKRKRKGIDYNAEIPFEKRPPPGYFDVAGEDRPVEQPKFPITIEELEGKRRVDVEAHLRKHDVAKNKIAQRQDAPSAILHANQLNDPEAVRKKSKLMLPPPQISDQELDEIARLGYASDLAGSEELAEGSGATRALLANYAQTLGRGMTPLRTPQRTPAGKGYAIMMESENLARLRESQTPLLGGENPELHP. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06507 369 Coils Coil 119 139 - -
Seca7g06507 369 Coils Coil 145 165 - -
Seca7g06507 369 SUPERFAMILY Homeodomain-like 14 84 IPR009057 -
Seca7g06507 369 SMART sant 36 83 IPR001005 -
Seca7g06507 369 CDD SANT_CDC5_II 33 84 IPR047240 -
Seca7g06507 369 Gene3D - 33 91 - -
Seca7g06507 369 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 12 369 IPR047242 GO:0000398|GO:0000974
Seca7g06507 369 FunFam CDC5 cell division cycle 5-like 37 98 - -
Seca7g06507 369 MobiDBLite consensus disorder prediction 88 129 - -
Seca7g06507 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 85 IPR017930 -
Seca7g06507 369 Pfam Myb-like DNA-binding domain 40 91 - -
Seca7g06507 369 ProSiteProfiles Myb-like domain profile. 32 81 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06507 Seca-Chr7 166745282 166748447 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06507 12 369 MYB-Related Transcription Factor Family AT1G09770 87.187 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca7g06507 Myb_DNA-bind_6 1.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06507 K12860 - gmx:100801352 659.833