Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06485 ATGGCGAACCCGTGGTGGACCGGGTCAGTTGGTCTAGGCGGTGTGGACAACTCAAGCAACTCTTCACCAATGAAAAAACCGGATCTAGGCTTCTCCATGAACGACAGCGTCGTAACAGGGAACCAAAGCGGTTGCGTTGGGGATGAAGAAGAAGATGAGAGAGAAAACAGTGACGAACCAAAAGAAGGAGCTATTGAAGTCGCTACCACGCGCCGTCCAAGAGGCCGTCCTCCTGGTTCAAAAAACAAACCAAAGCCACCGATATTCGTCACAAGAGACAGCCCTAACGCACTTCGAAGCCACGTCATGGAGATAGCAAGTGGAGCAGATATCGCCGATTGTGTTGTTCAGTTCGCCAGAAGGCGTCAAAGAGGTGTTTGCATTCTCAGCGGCAGCGGAACCGTCGTCAACGTTTCTCTCCGGCAGCATACGGCGCCTGGCGCCGTTATGGCGCTTCACGGCCGGTATGATATACTGTCGTTGACCGGTTCGATCCTTCCCGGACCGTCCTTGCCGGGAGCAAGTGGTTTGACTATTTATCTCTCCGGAGGTCAGGGACAGGTTGTCGGCGGCGGTGTGGTTGGTCCGCTGGTGGCGGCGGGACCGGTTATGATAATGGCGGCAACGTTTTCGAATGCAACTTATGAGAGATTGCCGTTGGAGGATGGTACTGAGCAGGAAGGTCAGGGGCAAGGTGGTAATTGTTCTCCTCCAGGGATGGTACAACAGGGTGGAGCTTCCGTCGGTGAAGCACCGTCGTCGATTCCGGTTTATAGTAATCTTCCTCCCAATTTGACTCTTCCGAATGGGCAACAGCTTAATCATGAAGCTTATAATTCTCCTTGGGCTCATGGTCATGCCAGACCACCTTTCTAA 876 0.532 MANPWWTGSVGLGGVDNSSNSSPMKKPDLGFSMNDSVVTGNQSGCVGDEEEDERENSDEPKEGAIEVATTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEIASGADIADCVVQFARRRQRGVCILSGSGTVVNVSLRQHTAPGAVMALHGRYDILSLTGSILPGPSLPGASGLTIYLSGGQGQVVGGGVVGPLVAAGPVMIMAATFSNATYERLPLEDGTEQEGQGQGGNCSPPGMVQQGGASVGEAPSSIPVYSNLPPNLTLPNGQQLNHEAYNSPWAHGHARPPF. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06485 291 PIRSF ESCAROLA 15 291 IPR014476 GO:0003680
Seca7g06485 291 CDD DUF296 99 182 IPR005175 -
Seca7g06485 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 222 - -
Seca7g06485 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 284 IPR014476 GO:0003680
Seca7g06485 291 Gene3D - 98 227 - -
Seca7g06485 291 MobiDBLite consensus disorder prediction 227 255 - -
Seca7g06485 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Seca7g06485 291 FunFam AT-hook motif nuclear-localized protein 98 226 - -
Seca7g06485 291 MobiDBLite consensus disorder prediction 1 94 - -
Seca7g06485 291 ProSiteProfiles PPC domain profile profile. 95 231 IPR005175 -
Seca7g06485 291 MobiDBLite consensus disorder prediction 222 255 - -
Seca7g06485 291 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06485 Seca-Chr7 166395231 166396106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06485 1 291 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 54.902 4.63e-88 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06485 - - aprc:113873404 375.941