Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06474 ATGAAAGGAAAGGGTGGACCCGAGAATGCTCTATGCACTTTCAAAGGAGTGAGACAAAGGACTTGGGGAAAATGGGTTGCTGAAATAAGAGAGCCTAATGGTGGGGCTAGGCTTTGGCTTGGCACTTTCAACACTTCCATTGAAGCCGCACTTGCTTATGACGATGCTGCAAGAAGGCTCTATGGTGCATCCGCCAAGCTCAATTTGGCTGCACCGGGAGACCCTTCCTCTGATCAGACTCATCAGAATTTGACCATTCCTACAGAACCTGTTGCTCCTACCTTAGTCTCCAACGACACTAATTCCAGTAATAATACGGTACTTATTGAAGAAGAAGAGGAGATGAATAAGGGGTTGTTCTGCTGGAGTACAGGTAACTACATCACGGATGATTTTCTGGAACTGAATGATACACTCGATGAAGGGCTTAAGGACTGGGATTCACTACTAGAGATGTAA 459 0.4575 MKGKGGPENALCTFKGVRQRTWGKWVAEIREPNGGARLWLGTFNTSIEAALAYDDAARRLYGASAKLNLAAPGDPSSDQTHQNLTIPTEPVAPTLVSNDTNSSNNTVLIEEEEEMNKGLFCWSTGNYITDDFLELNDTLDEGLKDWDSLLEM. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06474 152 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Seca7g06474 152 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Seca7g06474 152 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Seca7g06474 152 FunFam Ethylene-responsive transcription factor 2 12 71 - -
Seca7g06474 152 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Seca7g06474 152 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Seca7g06474 152 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Seca7g06474 152 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Seca7g06474 152 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 87 - -
Seca7g06474 152 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06474 Seca-Chr7 166291368 166291865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06474 1 86 AP2-EREBP Transcription Factor Family AT5G18450 70.930 3.56e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca7g06474 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06474 - - mtr:11435109 171.785