Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06467 ATGAATGTTGTTGCTCCTTCTCTCTGGAGTTTTGTAATGGCTACAGAGGAGCAGGAATTTGCATTGAAGGGCAAGTTGCGGGAACTGGTTAAGAGTATCGTTGACGGTGATGACTATTCGGTGCACGCTGCTGAAGAGGCTATTGACGCTCTTTCTGCTCTCAAGGATTTGAAATGCAGTGCTTCTTTCTCACGCAAATTGGACCATTTACCTGTTCCTCCTCAGTTTCGATGCCCCATCTCTGGTTACTTAATGACAGACCCTGTTATTTTGTCTAATGGACAGACTTATGATCGGCCATTCATACAGAGGTGGCTGAATGAAGTCCACAGAATTTGCCCTCAGACAAAGCAAGTTCTATCTCACTCTATTCTTACTCCTAATTGCTTGGTCAGAGGCATGATTTCACAGTGGTGTAAGGAGCATGGAATTGAGCTACCAAAGACTGTTGGTGTTTGGGACATTGATGATGGAGAAGTAACTGATGCACACAGACACCGTTTATGTTCATTGCTTCACATGTTGTCATTGCCATCTGTGTTCGATAAAAAAGAAGCTGCAAAAGAGCTTAGGCAGTTATCAAAGAGAATGCCTTCATTTCGAACACTTTTTGGGAAGCCAGAAGTAATTCAAGAATTGCTCAGTCCATTATCAGCTGGCACAGTTTGCATTGATCCTGAGCTACATGAGGACTTGATCACAACTCTTCTAAATCTCTCCATTAATGAAGATAACAAGAAAGTTTTAGCAGAGGATGAAAAGGTAATCTCCTTGCTTATTGATTCCTTGAAGTCAGGAACCACCCAAACAAGAAGCAATGCTGCAGCAGCTTTTTTCTCATTATCAGCACTTGAATCCAACAAACTCATCATTGGAAAATCTGGGGCTATCAAATATTTGGTTGACCTTTTAGAGGATGGACATCCATCAGCAGTGAAAGATGCTGCTTCAGCCATATTCAACCTATGTATGGCACATGAAAACAAAGGAAGGACTGTCAGAGAAGGGGCAATTCAGGTTATTCTTAGCAAGATCATGGACCATGTTCTGGTTGATGAGTTGTTGGCTCTACTAGCACTTCTCTCTAGCCATTCCAAAGCTGTTGAAGCATTGGGAAATCATGGTGCTGTCCCCTTCTTACTGGATATGATAAGGGAGAGCAAATCAGAACGCAGCAAGGAAAACTGTGTTGCAATCCTATATACAATCTTTTTCAATGATAGAACAAAGCGGAAGGAAGTTAAAGATGATGAAATAGGGAATGGTACACTGTCTAAGCTTGCACAATGTGGGACTCCAAGGGCCAAAAGGAAAGCTACTGGTATTCTTGATAGGCTTAACATACCTCAATCCTCAAAGCACACCACTTAA 1371 0.4201 MNVVAPSLWSFVMATEEQEFALKGKLRELVKSIVDGDDYSVHAAEEAIDALSALKDLKCSASFSRKLDHLPVPPQFRCPISGYLMTDPVILSNGQTYDRPFIQRWLNEVHRICPQTKQVLSHSILTPNCLVRGMISQWCKEHGIELPKTVGVWDIDDGEVTDAHRHRLCSLLHMLSLPSVFDKKEAAKELRQLSKRMPSFRTLFGKPEVIQELLSPLSAGTVCIDPELHEDLITTLLNLSINEDNKKVLAEDEKVISLLIDSLKSGTTQTRSNAAAAFFSLSALESNKLIIGKSGAIKYLVDLLEDGHPSAVKDAASAIFNLCMAHENKGRTVREGAIQVILSKIMDHVLVDELLALLALLSSHSKAVEALGNHGAVPFLLDMIRESKSERSKENCVAILYTIFFNDRTKRKEVKDDEIGNGTLSKLAQCGTPRAKRKATGILDRLNIPQSSKHTT. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06467 456 SMART arm_5 284 324 IPR000225 GO:0005515
Seca7g06467 456 SMART arm_5 242 283 IPR000225 GO:0005515
Seca7g06467 456 SMART arm_5 364 405 IPR000225 GO:0005515
Seca7g06467 456 Pfam Armadillo/beta-catenin-like repeat 287 323 IPR000225 GO:0005515
Seca7g06467 456 SUPERFAMILY RING/U-box 67 148 - -
Seca7g06467 456 SUPERFAMILY ARM repeat 170 446 IPR016024 -
Seca7g06467 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Seca7g06467 456 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Seca7g06467 456 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Seca7g06467 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 295 337 IPR000225 GO:0005515
Seca7g06467 456 PANTHER U BOX DOMAIN-CONTAINING 27 445 - -
Seca7g06467 456 CDD RING-Ubox_PUB 73 125 IPR045210 -
Seca7g06467 456 Gene3D - 158 451 IPR011989 -
Seca7g06467 456 Pfam U-box domain 72 142 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06467 Seca-Chr7 166214226 166216222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06467 134 455 U-box Gene Family AT3G07360 52.280 4.99e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06467 - - gmx:100806132 575.089