Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06466 ATGAACTGCTTCCCGTGTTGTGGCCCTAAGAAAAGCAATAGCAAGAGGGAGCATGGTTCTACAACACCGCACGAAACTATTGCAGCAAAAACATCAGATATGAAGAAACAAAGGCCAGATGAGCAGCTAAACCATGCTGACAATGCAAATTTTAAGGCACAAAATTTCACATTCCGTGAATTAGCAACTGCAACAAAGAATTTCCGTCAGGAATGCGTCCTGGGTGAAGGAGTCTTTGGCAGAGTGTACAGAGGCACAATTCCTGCAACAGGACAGATTGTTTTCTTTGGAGCCCTCCAGGCTGTAGCTGTGAAGCAACTGGATCGACATGGAACGGAAAACAGTAAGGAATTTCTGACCGAGGTTATGGCGCTAAGTCTCTTACAGCATGAAAATCTGGTCAGTCTCATTGGTTATTGTGCTGATGGAGATCAACGTCTTTTGGTATATGAATTCGTTCTTGGCTGTACTCTAGAAGACCGTCTTCTTGAGAATAAAACGGATCAACCTCCATTAAATTGGTATGAAAGAATGAAAGTAGCAGCTGGTGCTTCTAAAGGACTCCAATACTTGCATGACAGTGCCAATCCCCCAGTTATATACCGAGACTTCAAAGCCTCCAACATCTTGCTGGATAATGATCTTGATGCAAGACTAATGGATTTTGGAATGTCCAAGATTTCTGGTGCAGACAAGATGAATAATGCACCTCCAAGAGTTATGGGCACCTATGGTTACTGTGCTCCAGAATATGCAAGATCAGGTCAACTCACCTTTAAATCTGATGTATACAGTTTTGGAGTTGTCTTGCTAGAGCTCATAACTGGACGACGTGCCATTGATACCACAAGACCAAATGAAGAGCAAAACTTAGTTTCATGGGCACAACCCTTATTTAGGGACCCAAAAAGATATCCTGATATGGCAGATCCTGTTCTTAATAAACAGTTCCTAGAAAAGGATCTGAATCAAGCTGTTGCAATTGCAGCCATGTGCTTACAGGAGGAAGCAGAAGCTCGTCCTTATATGAGTGATGTTGTTACTGCTCTGAGTTTTCTTTCCATTGTTCCTCCAGAGGGTATGCCACCCCCTCTGCCCCCTGCCCCTTCGGTCTCTAAGGCTTGTGGAAGTGCAAGGGAAAGTGAATATGAGAGTGAGAGTGTTGTGAGTGAGAGTGAGAGTGAAAGTGAAGCAGAATCTGATAAGGAGAGCCACAATGGAGATGGTTCAGACTGTGAGGAAGGAGAAAGTGAAAGACATGGTTCTAAAAGCCATCGTAAACATGTGCTTTCCATCAAATCAAGCCGCAAAAGCAGCACAAGATCAAGGAAAGGAACTCTTAGTTCAGATTCAGGAGATGGAAGCATCTCTTCCAGCTGCAAAAGCAGTAGGAAATCACATGGTGAAGATGGTAATATAAGCAAGAAGACAAGCAGAAAATCTTCTGTTAGAGATTTAAGCCAGAAGAGCAGCAAGAAATCTTTACCTGAAGATTTAAGCCAGAAGAGCAGCAGGAAATCTTCATCCAAAGAATTAAGCCAGAAGAGCAGCAGAAAAACTTCATCCAAAGAATTAAGCCAGAAAAGCAGCAGAAAATCTTCCATCAGAGATTTAAGCCATAAGATGAGTGGAAAAACTTCTATCAAAGCTTTAAGCCACAAGAGTAGTAAGAGATCAGAAGATGGAAGCATTTCACGTGAGAGAAGGGCATCCTCCCATGGTTCTTCAAGCCGTCATAGCAGCAGTGTCAGTGAGAGTGTTCACTCAGACCTTAACAGCAGCAGCAGAAGAACAGAGGAAGAGAGCATACAGTTACACCATGGAAGCAGCATGGGATCAGATGAGGGAAGTGGTCACCCTTTTGATTGTATGAGCAGCAGTGAATCAGGCGAGGGAAGTGTTTATTCACACTGA 1914 0.4331 MNCFPCCGPKKSNSKREHGSTTPHETIAAKTSDMKKQRPDEQLNHADNANFKAQNFTFRELATATKNFRQECVLGEGVFGRVYRGTIPATGQIVFFGALQAVAVKQLDRHGTENSKEFLTEVMALSLLQHENLVSLIGYCADGDQRLLVYEFVLGCTLEDRLLENKTDQPPLNWYERMKVAAGASKGLQYLHDSANPPVIYRDFKASNILLDNDLDARLMDFGMSKISGADKMNNAPPRVMGTYGYCAPEYARSGQLTFKSDVYSFGVVLLELITGRRAIDTTRPNEEQNLVSWAQPLFRDPKRYPDMADPVLNKQFLEKDLNQAVAIAAMCLQEEAEARPYMSDVVTALSFLSIVPPEGMPPPLPPAPSVSKACGSARESEYESESVVSESESESEAESDKESHNGDGSDCEEGESERHGSKSHRKHVLSIKSSRKSSTRSRKGTLSSDSGDGSISSSCKSSRKSHGEDGNISKKTSRKSSVRDLSQKSSKKSLPEDLSQKSSRKSSSKELSQKSSRKTSSKELSQKSSRKSSIRDLSHKMSGKTSIKALSHKSSKRSEDGSISRERRASSHGSSSRHSSSVSESVHSDLNSSSRRTEEESIQLHHGSSMGSDEGSGHPFDCMSSSESGEGSVYSH. 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06466 637 FunFam Serine/threonine-protein kinase PBS1 153 360 - -
Seca7g06466 637 MobiDBLite consensus disorder prediction 575 591 - -
Seca7g06466 637 Pfam Protein tyrosine and serine/threonine kinase 71 349 IPR001245 GO:0004672|GO:0006468
Seca7g06466 637 MobiDBLite consensus disorder prediction 11 38 - -
Seca7g06466 637 MobiDBLite consensus disorder prediction 398 423 - -
Seca7g06466 637 MobiDBLite consensus disorder prediction 441 462 - -
Seca7g06466 637 PANTHER OS07G0668900 PROTEIN 3 354 - -
Seca7g06466 637 Gene3D Transferase(Phosphotransferase) domain 1 156 354 - -
Seca7g06466 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Seca7g06466 637 MobiDBLite consensus disorder prediction 553 574 - -
Seca7g06466 637 MobiDBLite consensus disorder prediction 463 543 - -
Seca7g06466 637 Gene3D Phosphorylase Kinase; domain 1 38 152 - -
Seca7g06466 637 MobiDBLite consensus disorder prediction 620 637 - -
Seca7g06466 637 ProSiteProfiles Protein kinase domain profile. 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06466 637 MobiDBLite consensus disorder prediction 363 637 - -
Seca7g06466 637 FunFam serine/threonine-protein kinase PBS1-like 33 152 - -
Seca7g06466 637 MobiDBLite consensus disorder prediction 424 440 - -
Seca7g06466 637 SUPERFAMILY Protein kinase-like (PK-like) 54 375 IPR011009 -
Seca7g06466 637 ProSitePatterns Protein kinases ATP-binding region signature. 74 105 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06466 Seca-Chr7 166201707 166204563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06466 1 392 Glycoside Hydrolase AT3G07070 55.665 2.92e-151 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca7g06466 PK_Tyr_Ser-Thr 6.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06466 - - gmx:100804526 684.1