Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06451 ATGGAATTCGACGCCGCTATTCCCATGTCCCAAGCGGCCCTTACTCCAGATTCACCGTGGATGATGAAATTGAGGTCAGGTGAAACAATGGAATCTGGACCTTATCCTCAGCGTCCAGGGGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGTTTTAATCATCCTCCTAATAGGAAGCTGGCTATTGCCACTGCAAGGATGATAGGCGAGTTTCCAGAAAGAATAGGCCAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCTTTAAATATTTTAGGCTATCCGCTCCGCCCTAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAATACTTGCAAATTCCACCATCCACAACCAAGTAATATGATGCTTTCATTACGGGGTTCTCCTGTTTACCCTACTGTCAATTCTCCAACTACACCAGGTCAGCAGTCATATACAGGAGGAATTACAAATTGGTCGAGAGCATCTTATGTTCCTACCCCACGCTGGCAAGGTCCGTCAAGTTATACATCTTTACTTCTACCTCAGGGAGTGGTTTCCGTGCCCGGATGGAGTGCATACAGTGGTCAAATGGGATCAATATCTAATTCAGACAGTCCACAGCAATCAATGGGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAATTAGAAAATTCCGGATCACATGGGGCATATTCTCAATTCCGTGCTGGCACTATTCCTGTAGGGTTTTATGCATTGCAAAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCGCGTGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTGGAGAGCCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATACCTGCATCGCCTTCAGCTGATGCTCCAGGAAGACGTCTGTTAGGATCTTCATCTGGAACTGCTGCATTAAATTTATCGTCAGAAGAAGGACTTGTTGAGTCAAGCTCAGCAAAGCCCAGGAGGCTCTCAGTATCAGAGACAAGACAGATTCCTTCTGGTGATGATGACATTGATGATGATGGTTGA 1296 0.4514 MEFDAAIPMSQAALTPDSPWMMKLRSGETMESGPYPQRPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVNSPTTPGQQSYTGGITNWSRASYVPTPRWQGPSSYTSLLLPQGVVSVPGWSAYSGQMGSISNSDSPQQSMGNGQTYGTSRQGELENSGSHGAYSQFRAGTIPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNIPASPSADAPGRRLLGSSSGTAALNLSSEEGLVESSSAKPRRLSVSETRQIPSGDDDIDDDG. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06451 431 Gene3D - 37 115 - -
Seca7g06451 431 Gene3D - 288 366 - -
Seca7g06451 431 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Seca7g06451 431 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Seca7g06451 431 SMART c3hfinal6 336 363 IPR000571 GO:0046872
Seca7g06451 431 SMART c3hfinal6 290 317 IPR000571 GO:0046872
Seca7g06451 431 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Seca7g06451 431 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Seca7g06451 431 ProSiteProfiles Zinc finger C3H1-type profile. 290 318 IPR000571 GO:0046872
Seca7g06451 431 MobiDBLite consensus disorder prediction 395 431 - -
Seca7g06451 431 ProSiteProfiles Zinc finger C3H1-type profile. 336 364 IPR000571 GO:0046872
Seca7g06451 431 MobiDBLite consensus disorder prediction 231 261 - -
Seca7g06451 431 Gene3D - 116 164 - -
Seca7g06451 431 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Seca7g06451 431 FunFam CCCH type zinc finger protein 288 376 - -
Seca7g06451 431 SUPERFAMILY CCCH zinc finger 294 320 IPR036855 GO:0046872
Seca7g06451 431 MobiDBLite consensus disorder prediction 395 420 - -
Seca7g06451 431 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Seca7g06451 431 PANTHER PROTEIN PHOSPHATASE RELATED 25 384 - -
Seca7g06451 431 FunFam Zinc finger nuclease 2 37 114 - -
Seca7g06451 431 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Seca7g06451 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 292 317 IPR000571 GO:0046872
Seca7g06451 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Seca7g06451 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Seca7g06451 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 338 363 IPR000571 GO:0046872
Seca7g06451 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Seca7g06451 431 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
Seca7g06451 431 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Seca7g06451 431 SUPERFAMILY CCCH zinc finger 339 363 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06451 Seca-Chr7 166033095 166039780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06451 20 430 C2H2 Transcription Factor Family AT3G02830 61.905 3.80e-178 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca7g06451 zf-CCCH 5.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06451 - - gmx:100786261 785.408