Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06449 ATGGAAGACAAAAAGAATAACGACACGAACATTGGAGAGTTTTCGGCTTTCTCTGCCAAACGGAGAACTAATAGCGGGAGAATCAATTTCGATTTGAATGAAGAGCCTCCTCCTTCTCCTATACATATCATGCTTCCTAGTTCTCACTCTCAGGTTTCTGCTGATGGTTGCCACATGGCGATGGGAGGGTTTATAGACTTGGAGGAACCTAATCATGAATTTTCATTCTCCACTAAAGGAGATGCTACAGGAGATATCAATGAATACAGTGATGCGAAACTGGTGAAGGATGCAACTATTGATGTTGGTAATAATAAGGGTAAGGGTAAGATGCCAATGTATTGTTCCGAGTCTCCAATAAGGGTAAGAGAAAAGGATGCAAATGTGAATGAGGTCTCCAATAATCCTCCTTTATCAACTGATGGTGGCAACTTCAAAACTCTTTCTTCGTTTGAGGTGGAGGTTGTTCCAGATCCTTCTTTTACACCTGCTAGCCAAAATGGCGATGATGAAGATAACGGAGTTACTGAAGGAAACATATCACTTCAAGAGGAGAATGTTGTTGTTGATGTTGCTGCTGGTGAGGAATCTGGGTCTAAAAGGAAGAGGAAGAGGAATAGGAAGAGGAGGAAGAGTGATGAAAGAGTAGTAGTCCAACTTGAGAGCCGAATGGACATACCGGATGATGGTTATCGCTGGCGTAAGTATGGACGCCAGAAAATCAAAGGAGGTTACCTTAGGAGCTATTACATGTGCTCGAATAATGGGTGTAGTGTAAGGAAACAGGTGGAAAGGGATTTAAGTAATTCAGGATGTGTAATTAAAACAACATATGATGGAAGGCATAATCATGAAGTGCCAATTAGCGGCGTTAGAATCATTAACCCACCCAAAATTAAGCCAAGACCCCGAACTATTAGGGAAGAGATTGAAGCTGCTAATGCAATGGTCACTTTTGCAATACCACCTGAGACTACTGCAAGGCTGCCTAGGCCTACACCTCCTCCACTTCATCCTGCAGGCAACAATTGCCATGGAGGAGGACTGAATCCTAATAACCGTTATGGTAATAATACTCCTCCGCAAGGTGGATCCACCTCATGA 1104 0.4284 MEDKKNNDTNIGEFSAFSAKRRTNSGRINFDLNEEPPPSPIHIMLPSSHSQVSADGCHMAMGGFIDLEEPNHEFSFSTKGDATGDINEYSDAKLVKDATIDVGNNKGKGKMPMYCSESPIRVREKDANVNEVSNNPPLSTDGGNFKTLSSFEVEVVPDPSFTPASQNGDDEDNGVTEGNISLQEENVVVDVAAGEESGSKRKRKRNRKRRKSDERVVVQLESRMDIPDDGYRWRKYGRQKIKGGYLRSYYMCSNNGCSVRKQVERDLSNSGCVIKTTYDGRHNHEVPISGVRIINPPKIKPRPRTIREEIEAANAMVTFAIPPETTARLPRPTPPPLHPAGNNCHGGGLNPNNRYGNNTPPQGGSTS. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06449 367 ProSiteProfiles WRKY domain profile. 222 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g06449 367 Gene3D WRKY domain 211 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca7g06449 367 MobiDBLite consensus disorder prediction 1 32 - -
Seca7g06449 367 SUPERFAMILY WRKY DNA-binding domain 221 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca7g06449 367 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 141 290 IPR044810 GO:0003700
Seca7g06449 367 MobiDBLite consensus disorder prediction 329 367 - -
Seca7g06449 367 MobiDBLite consensus disorder prediction 10 30 - -
Seca7g06449 367 Pfam WRKY DNA -binding domain 228 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g06449 367 SMART WRKY_cls 227 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca7g06449 367 MobiDBLite consensus disorder prediction 157 214 - -
Seca7g06449 367 MobiDBLite consensus disorder prediction 346 367 - -
Seca7g06449 367 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06449 Seca-Chr7 166012148 166014369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06449 155 289 WRKY Transcription Factor Family AT5G56270 41.667 1.01e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca7g06449 WRKY 6.8e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06449 K18835 - qsu:111999965 120.168