Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06445 ATGGCATCAATGAACTGGTTAGGTTTCTCTCTCTCCCCTCAACAACCTAACGAAGACAACAACCACTCTCAAACGGTGGCGCCTCGCCTCGGCTTCAACTCCGACGGAATCTCCGGCGAGTGCTTTGATCTCACTTCCGACTCCACTCATCAATCACTCAACCTCCCTCCTCCTTTCGGCATATTTGAAGCACTCAATCGAAACAACACTCCTCTAGATTGGAACACGAAGGGTTTAGAAAGCAGCAACGGAGAGGATAACTACAACATGCTATTGAGCAGTAACCACCAAAACCAGCCAAAGCTCGAGAACTTTCTCGACCACCACTCTTTTAGCGGTGACCATGGCACATACAACTCGGCTTCTTCACTAAAACTTCCACCTCAGCCGTCGGAAGAACCACCGCCATCCTGCGACGGTGGTGGAAGTCCGAAAAACAGCAACTCTATCGGGCTTTCCATGATAAAGACATGGTTGAGAAACCAACCGTCACAGTCAGATTCTGTTGCAAATATATCACTTTCTATGAGTACAGCGTCACAGTCAAGCACAATAGCACTGCCTCTCCTCACAGCGAACGTGGAAGGAGAGAGTTCTTCTTCGGATAGCAAACAGCAGCAAGGCGTTGTTGAAACTGTGCCTAGAAAGTCGGTTGACACATTTGGACAGAGAACTTCCATTTACCGTGGTGTAACCAGGCATAGGTGGACGGGTAGATATGAAGCTCACCTTTGGGATAATAGTTGTAGAAGAGAAGGCCAAACTCGCAAAGGAAGGCAAGTATTTGCAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGATCATACGATTTAGCTGCACTCAAGTACTGGGGAACAACAACGACTACAAATTTTCCGGTTAGCCACTATGAAAAAGAATTAGAAGAAATGAAGCACATGACTAGGCAAGAGTACGTCGCGTCATTGAGAAGGAAGAGCAGTGGGTTTTCTCGCGGTGCTTCTATTTATCGTGGTGTAACGAGCAGGCATCACCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACCCAAGAAGAGGCAGCAGAGGCATATGATATTGCTGCCATCAAATTCCGAGGACTGAAAGCTGTAACAAACTTCGACATGAGCAGATACGACGTTAGGAGCATACTTGAGAGCAGCACATTACCCATTGGTGGTGCTGCAAAACGTTTGAAAGGTGTTGACACCCTGGATATTGGTCAAAGTCAAACCTCCCAAGTGGATTCCACCATCATCACCACCTCCCATCTAAATTATGCACCACCTGCAACCCATCACCATGCTTGGCCTTCTCTTTCATTCCATCAACCCCAACCTTTCTTGAATAATTACCCTTCTTATGGTGGGCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATTTTTCTCAAACCTTTCAAGATATCCATCACCACCAACAACTCCAATTAGGAAACACCCACAATTTCTTTCACTCCAATTCTGGCTTGCAAGGTGTCATTAACATGGATTCTGCTGCTTCCATGGATAACAATAGCTATGATGGAAACGGTTACGTGATTCCCATGGCTACTTCTACTTTCTTTGGGGATGATGGGAACCAAAATCATAGAAGCAACGGGTTTGATGATAATGATGTAAAGACGCTTGGTTATGAAAATGTGTTGAGCTCTAGTACTGATCCTTATCATGCAAGGAACTTGTATTATCTCTCTCAGCAAACATCTGCAGATGCATGCAATAATACTTGGGTGCCAACTGCTATTCCTACTCTCCCACCAAGGCATGCCAATAATATGACTTCATCACCCTTCACATTATTGCATGAATAG 1875 0.4523 MASMNWLGFSLSPQQPNEDNNHSQTVAPRLGFNSDGISGECFDLTSDSTHQSLNLPPPFGIFEALNRNNTPLDWNTKGLESSNGEDNYNMLLSSNHQNQPKLENFLDHHSFSGDHGTYNSASSLKLPPQPSEEPPPSCDGGGSPKNSNSIGLSMIKTWLRNQPSQSDSVANISLSMSTASQSSTIALPLLTANVEGESSSSDSKQQQGVVETVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFAGGYDKEEKAARSYDLAALKYWGTTTTTNFPVSHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLKAVTNFDMSRYDVRSILESSTLPIGGAAKRLKGVDTLDIGQSQTSQVDSTIITTSHLNYAPPATHHHAWPSLSFHQPQPFLNNYPSYGGQKLWCKQEQDSDFSQTFQDIHHHQQLQLGNTHNFFHSNSGLQGVINMDSAASMDNNSYDGNGYVIPMATSTFFGDDGNQNHRSNGFDDNDVKTLGYENVLSSSTDPYHARNLYYLSQQTSADACNNTWVPTAIPTLPPRHANNMTSSPFTLLHE. 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06445 624 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 95 477 - -
Seca7g06445 624 ProSiteProfiles AP2/ERF domain profile. 329 388 IPR001471 GO:0003700|GO:0006355
Seca7g06445 624 MobiDBLite consensus disorder prediction 106 150 - -
Seca7g06445 624 Gene3D AP2/ERF domain 329 390 IPR036955 GO:0003700|GO:0006355
Seca7g06445 624 Gene3D AP2/ERF domain 227 295 IPR036955 GO:0003700|GO:0006355
Seca7g06445 624 FunFam AP2-like ethylene-responsive transcription factor 328 390 - -
Seca7g06445 624 CDD AP2 226 295 IPR001471 GO:0003700|GO:0006355
Seca7g06445 624 MobiDBLite consensus disorder prediction 113 127 - -
Seca7g06445 624 SMART rav1_2 329 394 IPR001471 GO:0003700|GO:0006355
Seca7g06445 624 SMART rav1_2 227 299 IPR001471 GO:0003700|GO:0006355
Seca7g06445 624 CDD AP2 328 390 IPR001471 GO:0003700|GO:0006355
Seca7g06445 624 PRINTS Ethylene responsive element binding protein signature 370 390 IPR001471 GO:0003700|GO:0006355
Seca7g06445 624 PRINTS Ethylene responsive element binding protein signature 228 239 IPR001471 GO:0003700|GO:0006355
Seca7g06445 624 FunFam AP2-like ethylene-responsive transcription factor ANT 226 295 - -
Seca7g06445 624 Pfam AP2 domain 227 285 IPR001471 GO:0003700|GO:0006355
Seca7g06445 624 Pfam AP2 domain 330 380 IPR001471 GO:0003700|GO:0006355
Seca7g06445 624 SUPERFAMILY DNA-binding domain 328 390 IPR016177 GO:0003677
Seca7g06445 624 ProSiteProfiles AP2/ERF domain profile. 227 293 IPR001471 GO:0003700|GO:0006355
Seca7g06445 624 MobiDBLite consensus disorder prediction 1 30 - -
Seca7g06445 624 SUPERFAMILY DNA-binding domain 226 295 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06445 Seca-Chr7 165918093 165922079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06445 149 416 AP2-EREBP Transcription Factor Family AT5G17430 73.741 4.40e-135 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca7g06445 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06445 K09285 - qsu:111984882 729.939