Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06425 ATGAAAGGGCGATCCCACCGCCCTCAGAGTACGGACCCACCGGACGATTGGGTCGACGGTTCATGGACCGTCGACTGCATTTGCGGCGTGACCTTCGACGACGGTGAAGAGATGGTTAAATGCGACGAGTGCGGCGTTTGGGTTCACACGCGCTGCTCTCGTTACGTCAAGGGAGACGACATGTTCGCCTGTGACAAGTGCAAGAACAAGACCAACGGCCGAGCTGACAACAACACCGAGGAAACCGAGGTTGCTCAATTGCTGGTTGAGCTCCCAACAAAAACCATTTCTTTGGAGAACAACAACAATTCTTTCGCGTCCAAAGTCGCCGCTCGTTCTCGCCGCCCTTTCAAGCTTTGGACCGATATACCCATGGAGGAGAGGGTTCACGTTCAGGGTATCCCTGGTGGTGATCCTTCTCTCTTTGCTGGAAGGACTGTGCCCTCGATTTTCAGTCCCCAATTGTGGAAATGCACCGGTTATGTTCCCAAGAAGTTTAATTTTCAGTACAGGGAGTTTCCCTCTTGGAATGAGAAAGAGGGTGCAGCACAAGAGAATGATAATGGAGCTGGGGTTCTTTTCTCCTTTTCTAAAGAAACCAGTGCTACTGCTGTCTTGGCTTCCCCTGTTGCTGCTCTGGTTGATATGAGATCTAGCCACGGCCGTGAAGGCAAGACGGGTTTCAAGGATATGGGGATGAACAAGTTTGGCGGGGAAGATGGGACACGTGTCCATAATGCGATAAAGAAGGAGAGGAGTTTGCTGAGGCCTCTTGTTGTTCATTCCAGTAAGCGCAGGAAAGAGGACTTGGGGAACTCCAATTCCAAAGACCGGAGTGGGAAGAAGCGGGTTAAGATCTCTTCTGACAAAGAGGTAGATCCCAAGAGGAGGAGTTCACATTCTTCTAAACCAGGTTATTTGATTTGCTTTCATTATATGCCCTTCTTGTTTGCTCATGCTATTTGCTGTTATTTTGGAGAATTGCTGACATGTAAATCTTGGCCTAGATAG 1011 0.4946 MKGRSHRPQSTDPPDDWVDGSWTVDCICGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDMFACDKCKNKTNGRADNNTEETEVAQLLVELPTKTISLENNNNSFASKVAARSRRPFKLWTDIPMEERVHVQGIPGGDPSLFAGRTVPSIFSPQLWKCTGYVPKKFNFQYREFPSWNEKEGAAQENDNGAGVLFSFSKETSATAVLASPVAALVDMRSSHGREGKTGFKDMGMNKFGGEDGTRVHNAIKKERSLLRPLVVHSSKRRKEDLGNSNSKDRSGKKRVKISSDKEVDPKRRSSHSSKPGYLICFHYMPFLFAHAICCYFGELLTCKSWPR. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06425 336 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
Seca7g06425 336 MobiDBLite consensus disorder prediction 263 301 - -
Seca7g06425 336 SUPERFAMILY FYVE/PHD zinc finger 14 72 IPR011011 -
Seca7g06425 336 MobiDBLite consensus disorder prediction 218 241 - -
Seca7g06425 336 MobiDBLite consensus disorder prediction 263 300 - -
Seca7g06425 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 75 IPR013083 -
Seca7g06425 336 SMART PHD_3 25 68 IPR001965 -
Seca7g06425 336 PANTHER UNCHARACTERIZED 1 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06425 Seca-Chr7 165705489 165706499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06425 24 67 PHD Transcription Factor Family AT5G22260 44.681 1.19e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca7g06425 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06425 - - pcin:129322189 398.667