Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06412 ATGGCAATGGCAATGACAATGCCTCTTACTCTAAGGAATAAGCTCAAGACTCTTTGTTCTTGTGGAGATGGCTGGTCTTATGCCATTTTCTGGCGTTTTCATCCCCGGAATTCCCTGTTGTTGACTGTGGAAGAAGCATACTATGAAGAGCAATTGGGAGAAGAGATTGCCAACGTGCTTCCACAGGTGCAATTGCTAGGCGAAGGAATTGTTGGTGAAGCTGCTTTCACAGGCAAGCACAGTTGGGTGCACTCAGATAGTCAAATCCAAGAATGGAATTTGACTGGGCAGAATATTTGTGAGAATGACTCTGGATTGCATCAACAATTCTCCTCTGGGATAAAGACAATTGTGGTCATACCTGTCAAAGCATGGGGAGTGGTGCAATTTGGATCTAAAAAGAAGATTTTGGAGAGAGTGGACTTTTTGGAGCAAACACAAAGCTTGCTCATGGAGATAGATGATACAAATATGCCTGACATGTCAGGAAATGCAGTTTTATCTTTGAACTGTGAAGATTATGATCTAAATGGGTTGTTGGCTTCCATTTCTTCCGAAAATTCAGATGATTGGAATCTCAAATATGCTCATGATGAACACTCTAAAGAGCTCAGAAAAGTTTTTTCTTCTGAAAGTTTCAATGATCCTTTCCCTTCTCAATTTGAGACTTATGAAGAAGGGGTAACTTCATTGCAAGGGGATTCTTCTTGTCTCAGTGACCTATTGAAAGGTCCCATAGAAGCCCAAACTGTATTATCAGATAGGGTGAGTACTGATGTGCTTTTGAAGCCTAACTCTTCTATGAGCAGCTTAATTGCCAACAACCACTGTTTTGGTGCATGGAGTGGTGAAGTATCTTCTTTTGATTTGTTGGGGAAACAATTGGTATCTGAAGTATCTTCAACATTAACCTCATTGCACAGTATGAACACAGGGTCATTTCAAGACAAATTACAAAATTCACTGGATAACCAACATTCTTCTCAATCCAGTGTTGTGACAGATGTTAATTTCCCCCCGAATTCAAATACACTACATGGACTCTTTGAGAGCTTAGAGCCAGTTGATATGTCAGAAGAATTTTTGAAGTTCAGCTCCATGGATGATCTTTGCCAGTGGTTTGCTCCTTCTCCAGAGGATAGTATCTGCAGAACAATAAGTGCATTGGATAATACCTTTTCTGAATCAATAGAATTTAATCTTGCTTCTTTTGATTTGGTTGGAAGCAGTTCTTTAAGTGATATCCCAGTGACATGCCTAGCTGGGGATAATGCCATCACCAATGCTCTCAAATCAGATGGGAAAGAAACATCAGTAGCTGTGCATAGCTCTGAAAATGGTCTCTTGGATAGCATGGAACTTGATTTGACCTGTGATCAAGTTAATGAATGGTTGGGGAATATACTTACACCAATGGTGAATGCTGCTACCGATACTGATACTGGCTTTTCTGAATGCCCATCAGAGTTGAATATTGGTACACTAACTGGCACCAGGAAAAGACTATTCTCAGAGTTAGGAATTGAAGAGCTTTTGACGGGTGAATCAAATAATAACCCTTTCAATAGTTCTGATTTTGAGCATGTGTTATCATCCAATAAGAGGCAAATGGTAGAGTTTTCACCAATGAATAGAAATAGAAGTCCAATACATTTTGCAAACCTTGATAGGCCTGAGGCTAGAGCAAACTTGATGCAGCCTGTTTCTGACTTGGACAAGTCAAACACTCTTTTAAGCAAGAAAGATACATTCCCAAAATTCCAAGTAGGCATGTTGATTGATGATAGGAATAGCATTAATATTGGGAAGGCTGTTCCAGCACACCCTCAAAAGCCAGAGGAGCCCACAAAACCCACCAAGAAGAGGGCTAGGCCAGGGGAGAGTACTAGACCACGACCAAAAGATCGCCAGCAGATCCAAGACTGTATTAAGGAGTTGAGAGGAATCATCCCCAATGGTGGAAAGTGCAGCATTGATTCTTTGTTAGACCGCACCATCAAATACATGCTTTTCTTAAGAAGTGTTGTCAAGTATGCAGACAATCTAAAGGAACCTAATGAGCCAAAGCTCATTGACCAAGAAAATGGAGTGGTTCTAAAAGACAATAGAGTGGGAGATAACAAAAACTGTGGTGTTACATGGGCATTTGAAGTGGCACAACAAACAACTGTATGCCCAATTATAGTTGAGGACATGAGCACACCTGGACAAATGCTTATAGAGATGCTTTGTGAGGAGCAGGGTTTCTTCCTTGAGATAGTTGACATTATTCGCGGTTTTGGGCTGAATATCTTGAAAGCAAAGATGGAATTAAGAAAGAACAAACTATGGTCACGCTTTATTGTTGAGGCCAACAGACATGTGACAAGGATAGATGTATTTTGGTCCCTTATCCATCTTCTGCAGCAAACAAACACCTCAGGAGTTGATTCTGCTAATAAGCAGTGCAATGTTATTGATGCCAATATTTCTTAA 2475 0.4044 MAMAMTMPLTLRNKLKTLCSCGDGWSYAIFWRFHPRNSLLLTVEEAYYEEQLGEEIANVLPQVQLLGEGIVGEAAFTGKHSWVHSDSQIQEWNLTGQNICENDSGLHQQFSSGIKTIVVIPVKAWGVVQFGSKKKILERVDFLEQTQSLLMEIDDTNMPDMSGNAVLSLNCEDYDLNGLLASISSENSDDWNLKYAHDEHSKELRKVFSSESFNDPFPSQFETYEEGVTSLQGDSSCLSDLLKGPIEAQTVLSDRVSTDVLLKPNSSMSSLIANNHCFGAWSGEVSSFDLLGKQLVSEVSSTLTSLHSMNTGSFQDKLQNSLDNQHSSQSSVVTDVNFPPNSNTLHGLFESLEPVDMSEEFLKFSSMDDLCQWFAPSPEDSICRTISALDNTFSESIEFNLASFDLVGSSSLSDIPVTCLAGDNAITNALKSDGKETSVAVHSSENGLLDSMELDLTCDQVNEWLGNILTPMVNAATDTDTGFSECPSELNIGTLTGTRKRLFSELGIEELLTGESNNNPFNSSDFEHVLSSNKRQMVEFSPMNRNRSPIHFANLDRPEARANLMQPVSDLDKSNTLLSKKDTFPKFQVGMLIDDRNSINIGKAVPAHPQKPEEPTKPTKKRARPGESTRPRPKDRQQIQDCIKELRGIIPNGGKCSIDSLLDRTIKYMLFLRSVVKYADNLKEPNEPKLIDQENGVVLKDNRVGDNKNCGVTWAFEVAQQTTVCPIIVEDMSTPGQMLIEMLCEEQGFFLEIVDIIRGFGLNILKAKMELRKNKLWSRFIVEANRHVTRIDVFWSLIHLLQQTNTSGVDSANKQCNVIDANIS. 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06412 824 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 61 149 IPR025610 -
Seca7g06412 824 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 636 679 IPR036638 GO:0046983
Seca7g06412 824 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 623 672 IPR011598 GO:0046983
Seca7g06412 824 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 7 815 IPR043561 GO:0003700|GO:0006355
Seca7g06412 824 MobiDBLite consensus disorder prediction 602 638 - -
Seca7g06412 824 MobiDBLite consensus disorder prediction 613 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06412 Seca-Chr7 165519488 165524677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06412 614 811 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.500 7.59e-62 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06412 - - gmx:100798158 1084.71