Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06410 ATGGACACAGCTCAATGGCCACAGGAGATTGTGGTGAAACCAATAGAAGATATAGTAGTGACAACAAATACATGTCCAAAGCCTGCATCTGCAGTTGCTACTACTTTGGAGAGAAAGCCAAGGCCACAGAAAGAACAAGCTCTTAATTGTCCAAGGTGTCATTCAATCAACACCAAATTCTGTTACTACAACAACTACAGCCTCACTCAGCCTAGATATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCCCTCAGAAACATCCCTGTAGGAGGTGGTTCAAGGAAGAACAAGAGATCTAATTCTGTTTCCTCTTGTTCCATACCACCTCCAACCAAGAAGCTTCCTGATCTGATCACTCCTCCAGCAAGTTTATCACAAAATTGCACTCAAAACCCTAAGATCCATGATGGCCAAGATCTAAATTTGGCTTTCCCAACCACCACCACAAGAGATTTCAGAAATAATATCTCTGAAATGGTTCAAGTTCAACAAAATAACAACACCATGTCTGCTTCAGCTTCTTCCTCTTCTTCAATAACTACTACTGCCACCACTACTCAACTCTCAGCATTGGAGCTTCTTACTGGGATCAGTTCAAGGGGTTTGCATTCTTTCATGCCTTTGCCAGTTCCAGCTGATCCTAATTCTGTTTACACATGTGGTTTTCCCCTGCAAGATTTTAAGCCAACCCTGAATTTCACTTTAGATGGGATTGGAAGTGGGTATCCAAGTCTTCAGGGTGTTCAAGAAACAAATACTGGGAGGCTTTTGTTTCCATTTGAGGACTTAAAACAGGTGTCTAGCACCACCACAACAATGGATCAGAGTAATAAGGACCAACATCATGGAGATTCAACTGGGTATTGGACTGGAATGTTAGGAGGAGGATCATGGTAA 909 0.4235 MDTAQWPQEIVVKPIEDIVVTTNTCPKPASAVATTLERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSNSVSSCSIPPPTKKLPDLITPPASLSQNCTQNPKIHDGQDLNLAFPTTTTRDFRNNISEMVQVQQNNNTMSASASSSSSITTTATTTQLSALELLTGISSRGLHSFMPLPVPADPNSVYTCGFPLQDFKPTLNFTLDGIGSGYPSLQGVQETNTGRLLFPFEDLKQVSSTTTTMDQSNKDQHHGDSTGYWTGMLGGGSW. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06410 302 MobiDBLite consensus disorder prediction 97 112 - -
Seca7g06410 302 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Seca7g06410 302 MobiDBLite consensus disorder prediction 272 302 - -
Seca7g06410 302 MobiDBLite consensus disorder prediction 89 118 - -
Seca7g06410 302 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Seca7g06410 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 182 IPR045174 GO:0003700|GO:0006355
Seca7g06410 302 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06410 Seca-Chr7 165489859 165491319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06410 1 302 C2C2-Dof Transcription Factor Family AT4G24060 46.991 1.49e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca7g06410 zf-Dof 3.7e-33 No_clan