Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06362 ATGAGAGCTCTGAACCTTGTGCATGTATACGATTGGTTCCTGATAGATTTGGTTCTGGTTCTATGTGGGTCTTCCACCAACCATAGTAAGTTGGTTGCTTGGGTCAAAGATTTTTCTGTCATGGCAACTAGACTTCAATTTGAGAATTTTTGTGAAGTTGGAGTCTTCTCTAAACTCACCAATGCCTATTGTTTGGTTGGTATTGGAGGCTCTGAAAACTTCTACAGTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAAACCTCCATTGCTGGCACTCGTATTGTCGGTCGTCATTGTATTGGAAACAAGAACGGGCTTCTCTTGCCCCACACCACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCAGATCAAGTTGTTGTTCAGCGCATAGAAGAAAGATTATCTGCTCTGGGAAATTGTATAGCATGCAATGACCACGTGGCCCTCACACACACTGATCTCGACAGGGAAACTGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACTGTTGCCGGTAATATTCTTGTTGGCAGTTACTGTGCCTTCTCCAACAGAGGTGGTTTGGTCCACCCTCATACTTCCATTGAGGACTTGGATGAGCTTTCTACACTTCTTCAGGTTCCTTTGGTTGCTGGGACTGTCAATCGTGGAAGTGAACTAATAGCTGCTGGCTTGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACTACAGCAACAGAGCTATCTGTGATTGAGAGTGTTTTCAAGCTGAGGGAAGCCCAGCCTAGTGCCATTGTGGATGAGATGAGGAAATCGCTCATTGATAGCTATATATCTGATACTGCAGATAGTAAGTTGGTTGCTTGGGTCAAAGATTTCTGTCATCTCTCTGTCATGGCAACTAGACTTCAATTTGAGAATTCTTGTGAAGTTGGAGTCTTCTCTAAACTCACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCTGAAAACTTCTACAGTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTTGTCAAAACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTATTGGAAACAAGAAAGGGCTTCTCTTGCCCCACACCACAACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCAGATCAAGTTGTTGTTCAGCGCATAGAAGAAAGATTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCACGTGGCCCTCACACACACTGATCTCGACAGGGAAACCGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACTGTTGCTGGTAATATTCTTGTCGGCAGTTACTGTGCCTTCTCCAACAGAGGTGGTTTGGTCCACCCTCATACTTCCGTTGAGGACTTGGATGAACTTTCTACACTTCTTCAAGTTCCTTTGGTTGCTGGGACTGTCAATCGTGGTAGTGAAGTAATAGCTGCTGGTTTGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTCTCTGTGATTGAGAGTGTTTTCAAGCTGAGGGAAGCCCAGCCTAGTGCCATTGTGGATGAGATGAGGAAATCGCTCATTGATAGCTATGTCTGA 1653 0.4422 MRALNLVHVYDWFLIDLVLVLCGSSTNHSKLVAWVKDFSVMATRLQFENFCEVGVFSKLTNAYCLVGIGGSENFYSAFEAELADVIPVVKTSIAGTRIVGRHCIGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTVAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSELIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYISDTADSKLVAWVKDFCHLSVMATRLQFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIVGRLCIGNKKGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTVAGNILVGSYCAFSNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06362 550 SUPERFAMILY Pentein 41 264 - -
Seca7g06362 550 Gene3D - 41 265 - -
Seca7g06362 550 Gene3D - 306 530 - -
Seca7g06362 550 SUPERFAMILY Pentein 306 529 - -
Seca7g06362 550 SMART eIF6neu2 308 509 IPR002769 GO:0042256|GO:0043022
Seca7g06362 550 SMART eIF6neu2 43 244 IPR002769 GO:0042256|GO:0043022
Seca7g06362 550 CDD IF6 42 263 IPR002769 GO:0042256|GO:0043022
Seca7g06362 550 Hamap Translation initiation factor 6 [eif6]. 295 550 IPR002769 GO:0042256|GO:0043022
Seca7g06362 550 FunFam Eukaryotic translation initiation factor 6 41 265 - -
Seca7g06362 550 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 306 549 IPR002769 GO:0042256|GO:0043022
Seca7g06362 550 Hamap Translation initiation factor 6 [eif6]. 30 285 IPR002769 GO:0042256|GO:0043022
Seca7g06362 550 NCBIfam translation initiation factor IF-6 309 529 IPR002769 GO:0042256|GO:0043022
Seca7g06362 550 NCBIfam translation initiation factor IF-6 44 264 IPR002769 GO:0042256|GO:0043022
Seca7g06362 550 FunFam Eukaryotic translation initiation factor 6 306 530 - -
Seca7g06362 550 CDD IF6 307 528 IPR002769 GO:0042256|GO:0043022
Seca7g06362 550 Pfam eIF-6 family 44 243 IPR002769 GO:0042256|GO:0043022
Seca7g06362 550 Pfam eIF-6 family 309 508 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06362 Seca-Chr7 164913828 164921878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06362 306 550 Eukaryotic Initiation Factors Gene Family AT3G55620 90.612 6.55e-167 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06362 K03264 - tut:107362863 673.315