Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06349 ATGAATAGTCATTCATTTCTAGAAGCTTCTAAGGACATGGATTCTAGCAATTTTTATGTTGACAAGAGGGCAGAGAAAAAGATAACATACAAGGAATGTCTCAAGAACCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGATGTGGTGAGTTCATGCCTGCTGGAGAAGATGGAACACTTGAGGCTCTTAAGTGCTCAGCTTGCAATTGCCACAGAAACTTTCACAGAAAAGAGATAGAGTCTGATTCCAATTGCCCTTCTCAACATTATGTTCTTCCACTCCTTGCTGATACTACACATATGAGGCCCATTTTGGCTCATTTATCTCCCAACAAAAGTGGGTCAATTAGTCCTTCTGATCAGTCTGATGAGAAGGAATGTGAAGGAGGGATAAAGGAGGTGGAAAATCCAACTGAAAATGTGAAGAGGTCCAGAACTAAGTTCACACAAGAACAGAAGGAGAAGATGCTGGGTTTTGCAGAAAAGGCAGGGTGGAGGATACAGAAACTAGAGGAATCTGTGGTGCAGAAGTTTTGCCAAGAGGTTGGAATCAAGAGAAGAGTGCTCAAAGTGTGGATGCACAATAACAAGAACACTTTTGCCAAGAGAAATCTCTCCATTAGCTAG 630 0.4206 MNSHSFLEASKDMDSSNFYVDKRAEKKITYKECLKNHAAAIGGNATDGCGEFMPAGEDGTLEALKCSACNCHRNFHRKEIESDSNCPSQHYVLPLLADTTHMRPILAHLSPNKSGSISPSDQSDEKECEGGIKEVENPTENVKRSRTKFTQEQKEKMLGFAEKAGWRIQKLEESVVQKFCQEVGIKRRVLKVWMHNNKNTFAKRNLSIS. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06349 209 MobiDBLite consensus disorder prediction 120 148 - -
Seca7g06349 209 MobiDBLite consensus disorder prediction 109 148 - -
Seca7g06349 209 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Seca7g06349 209 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 200 - -
Seca7g06349 209 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 80 IPR006456 -
Seca7g06349 209 NCBIfam homeobox domain, ZF-HD class 143 199 IPR006455 -
Seca7g06349 209 Gene3D - 129 203 - -
Seca7g06349 209 FunFam Zinc-finger homeodomain protein 2 131 203 - -
Seca7g06349 209 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Seca7g06349 209 SUPERFAMILY Homeodomain-like 133 203 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06349 Seca-Chr7 164791500 164792129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06349 28 205 ZF-HD Transcription Factor Family AT1G14440 52.577 5.15e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca7g06349 ZF-HD_dimer 3.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06349 - - gmx:100793926 305.449