Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06347 ATGGTCGTGAACGGAGGAAAGCCCTTGAAGCGCATGAAAAGGAGAGTCACCGCCGATTTCTACGACTTCCTCACGTTTCCCTCGCCGTCACTCGCCGCTTCGGAAAACTTCGCCGGCGGACCCTTCCGGTCCAACGTCCGCTCCTTCCTCACCAAGCACGCGCTGCTCCCGCCGCCATCGGCGCTCTTCCCCCACCTGTTGACGTGGCAGATCCTCTTCCGGATCGGAGATCTCACCGACGGCCCCGAATCGGGCCCGGCGGTGGTGTGTCTTGACGTCGTGGAGGAGGACGTGGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGGAAACGCTACCATTTTATAATCAAAGCAGATGGGAGCTCCATTGGTGGGTACCACAAGCCATGTATGTGTTGTGGAGATATCTTGCATTTGTCGGAATCCAAGTGCAAGTCATGCAACCATGTGACAACCACTGATGATGTTGAAGACTGGGTGTACCATCAATTAGAGAGCACGACTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGCCACATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGGCTAGAGTACCGCTTGCTCCATGCCATTATGAAGGGACATCCGTGGTACGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACACAGGAAGCATATACGTCAGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCGTCTTCCACTCCCAGGAACAACAGCCCCATTCACGTGTGCAGGATATGATCTCATATTATCAGTCTTTGTCAGAGCATGAGCTTGTAAATATCAGGGACCTCTTTTGTTTTTTGATGGGTTTGATTCATGATGCTCGCAAGACTGCATCAAAGGTTGATGACATAACCTGCAAGAAGCGTCGTTTAAATGCTTCTGGACTATCAAGTTCTTGGGAGAAGAGTGATGTTGAACGTGTGGAGGAAGCCATGATCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCTGGCGTGCTCTTAGAGGTGCTGTTTGTAAGGTGGCCTCTCCAGAGCTGCTTGATTATTGTCTTGGAGAATTGGGAGGAAAAGTGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGGTTAGACTTCAATCTGATTCTTATGGGGTGTTTGATCTTTGGTCTTTTCCAGTTTAACTCCTTGAAAGGATGTCGTACGCACTGTCTTTTCCACTGCTTAGTTTTACGCTTTTCAAGTTACAGTGAAGCTGAACTTATGTTTGATCTTTGCATGATCAATTGA 1461 0.488 MVVNGGKPLKRMKRRVTADFYDFLTFPSPSLAASENFAGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQILFRIGDLTDGPESGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLESTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTQEAYTSAVESLSNLPLSVFHSQEQQPHSRVQDMISYYQSLSEHELVNIRDLFCFLMGLIHDARKTASKVDDITCKKRRLNASGLSSSWEKSDVERVEEAMIRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVYGGMVVNSRCNPQTGVYEFRLDFNLILMGCLIFGLFQFNSLKGCRTHCLFHCLVLRFSSYSEAELMFDLCMIN. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06347 486 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 435 - -
Seca7g06347 486 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06347 Seca-Chr7 164771400 164776453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06347 86 435 PHD Transcription Factor Family AT5G22260 32.970 3.31e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06347 K26271 - gmx:100818189 805.438