Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06295 ATGGAAAGCACTGTGGCATATGAGAATGATCTCAACCTCAAGGCTACTGAGCTTAGATTGGGGCTTCCAGGGACAGAACAAAATGAGGAGAAAGCATTGGCTGCTGTTAAAACCAACAAAAGATCATTAACTGAAGCCTCTGAGGAGTGTGGTTCAAAGGGCTCTAATGTTCAACATGTGGACAGTGATGCAGCCCCTCCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAACAGCCTGCAGGAGGCTGAGGCTGCAGGGATCTATGTGAAAGTTAGCATGGATGGAGCCCCTTACCTCAGAAAGATAGACCTGAGGGTCTATGGAGGCTATAGAGAACTCCTCAAAGCTTTAGAAAACATGTTCAAGTTGACCATAGGGAATTCTGAAAATGACCTGGGTTTTGCTTTTTCAGGTGAGTACTCTGAAAAAGAAGGTTATAAGGGTTCTGATTATGCACCTACATATGAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGATCAGAAGCCAGAGGTTTAGGTTGTGGTGTTTGA 609 0.4466 MESTVAYENDLNLKATELRLGLPGTEQNEEKALAAVKTNKRSLTEASEECGSKGSNVQHVDSDAAPPSKAKIVGWPPIRSYRKNSLQEAEAAGIYVKVSMDGAPYLRKIDLRVYGGYRELLKALENMFKLTIGNSENDLGFAFSGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06295 202 MobiDBLite consensus disorder prediction 45 66 - -
Seca7g06295 202 Pfam AUX/IAA family 49 199 IPR033389 -
Seca7g06295 202 FunFam Auxin-responsive protein 88 202 - -
Seca7g06295 202 Gene3D - 87 202 - -
Seca7g06295 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 196 IPR003311 GO:0005634|GO:0006355
Seca7g06295 202 SUPERFAMILY CAD & PB1 domains 84 191 - -
Seca7g06295 202 ProSiteProfiles PB1 domain profile. 93 192 IPR000270 GO:0005515
Seca7g06295 202 MobiDBLite consensus disorder prediction 48 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06295 Seca-Chr7 164164795 164166465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06295 23 198 B3 DNA Binding Superfamily AT2G46530 25.789 2.55e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g06295 AUX_IAA 2.6e-57 CL0072