Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06294 ATGGCAACTTTGCTAAGAAAGGAGCATGGTTTGAACCTCAAGGAGACTGAGCTGTGTCTGGGTCTGCCAGGCGGCGGCGGCGGAGGCGGTGGTGGTGGTGGCGGCTCTGAGGTGGAAACTCCAAGAGCATCTGGGAAGAGAGGGTTCTCTGAGACAGTTGATCTGAAGCTTAATCTTCAATCCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAAAAGACCCTTCTTAAGGATCCTGCCAAGCCACCAGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAGAAGGTGAACAATGAGGAGGGAACTGAGAAGACAACAACAAGCACTACTACTGCTGGGGCATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTCGACTTGACTATGCACAAAAGCTACAAAGATTTATCTGATGCCTTAGCCAAGATGTTCAGCTCCTTTACCATGGGTTATAATTTTTTATATTGGGACTGCGCTGAAGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCCGAAGCGATTGGGCTTGCACCAAGAGCCATGGAAAAATGCAAAAACAGAAGCTGA 768 0.474 MATLLRKEHGLNLKETELCLGLPGGGGGGGGGGGGSEVETPRASGKRGFSETVDLKLNLQSKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNNEEGTEKTTTSTTTAGAFVKVSMDGAPYLRKVDLTMHKSYKDLSDALAKMFSSFTMGYNFLYWDCAEGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06294 255 FunFam Auxin-responsive protein 121 247 - -
Seca7g06294 255 Coils Coil 55 75 - -
Seca7g06294 255 ProSiteProfiles PB1 domain profile. 126 237 IPR000270 GO:0005515
Seca7g06294 255 Gene3D - 121 249 - -
Seca7g06294 255 MobiDBLite consensus disorder prediction 24 49 - -
Seca7g06294 255 Pfam AUX/IAA family 43 246 IPR033389 -
Seca7g06294 255 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 242 IPR003311 GO:0005634|GO:0006355
Seca7g06294 255 SUPERFAMILY CAD & PB1 domains 118 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06294 Seca-Chr7 164105522 164107987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06294 113 245 B3 DNA Binding Superfamily AT4G23980 28.148 8.81e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g06294 AUX_IAA 1.9e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06294 K14484 - gmx:100810762 411.379