Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06290 ATGACAAGCCTAGCGGTGAAGGTCAATAGGGCGAAGCTCTCGGCATGCTTGACGTGTCGTTTGTGCAATAAATGGTTCAAAAACGCCACCACAATATCAGAATGCTTGCATACTTTTTGCAGGGAATGTATAGATAAGAAGCTAATAGATGAGAAACTAAAGAACTGTCCAGTATGCAATGTAGACTTGGGTTGCTCTCCATTGGATAAATTAAGGGCAGATCACAGTCTGCAATATTTGAGGGAGAAAATTTTCCCCAGTGACTCTGAAGAAAAAACTGCTAAGGCACCTGAAAATGTCGATTCAGACACAGTGCCAGCCAAAAGAAAGAAAAAATCTCCATCTTCATTGAAAGCCAATGCAAGAAGAGCTAAAGCTGCTGCTGCAGTAGAAGTTATCACTCCACAAGAACCAGAGTTGCCTGCTTCTGAACCTGATAAAGTGGAAGATGCTAAGCAAGATGAAAAACAGCAAAGTGGGATAGTAATTTTGGATGAAGTTTCTACAATTCTATCTGCAAGAAGAGCAAAAGCTGCAGCAAGAAGAAAATTTATTCCATATGAATTAACTCCTCCTTGTCAACCTGACAAAGTAACAGGAGATGAAAAGAAAGATGATGACTTTCCCCAGCTTGAAACTCTCACTGAGACTTCCAAAACCATTCTCCAGAATTGTCCAAAACCAAATTCAAGTCAAGAAATAGTGCCCAACAACAAGACTTCAGGGGACAGTGCTGAGTTATGGAAAGAAAATGCTGATGTGATGTGTGAACCAATGAATTTCCAGCAGGAAATTGCAAGCAAAAACAAATCTCTTAATAAGCCTACCATGCAAGAAAATGCTGTGATTCCTGTGCTTGTGGACTCTAGTGACAATGACTCTGAGGTGCCTAAGGTCAAAGAAAAGAAACATTGTCACCAAATAGAAGCAGCTTCTGACAAAAATAAATCTCCTCCTCCTCCAAAATCAGATTCATTAGAACTCAAAAGGCTACACAGCACCACCCGAGGAAAAACACTCCAAATCTCTGAGGACTTGAATCTTCCACCACAACCTGTGATTTTTTCAAACTATGAAAGCAACATAAGATCTCATCCAGTCTGGTTCTCATTGGTTGCTTCTGAAGAGAAGGATGTAGGTGCACAATTGCCTCAATTACCTTACCGCTACCTAAGGATCAAGGATGGTAGTGTACCTGTTTCCTTTATCAAAAAGTATCTGATAATGAAGCTCGGTCTTCCTAGTGAAGCTGAGGTGGAGGTCTCATTTCAAGGCCAGCCAGTTCCATCTTCATTGCAACTGCAAAGCTTGGTAGACTTGTGGTTGCAAACAATGCCAACTTATGAGGTTCGGACATGTTATGAAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCATACAGTCGAAAGGCTTGA 1416 0.4096 MTSLAVKVNRAKLSACLTCRLCNKWFKNATTISECLHTFCRECIDKKLIDEKLKNCPVCNVDLGCSPLDKLRADHSLQYLREKIFPSDSEEKTAKAPENVDSDTVPAKRKKKSPSSLKANARRAKAAAAVEVITPQEPELPASEPDKVEDAKQDEKQQSGIVILDEVSTILSARRAKAAARRKFIPYELTPPCQPDKVTGDEKKDDDFPQLETLTETSKTILQNCPKPNSSQEIVPNNKTSGDSAELWKENADVMCEPMNFQQEIASKNKSLNKPTMQENAVIPVLVDSSDNDSEVPKVKEKKHCHQIEAASDKNKSPPPPKSDSLELKRLHSTTRGKTLQISEDLNLPPQPVIFSNYESNIRSHPVWFSLVASEEKDVGAQLPQLPYRYLRIKDGSVPVSFIKKYLIMKLGLPSEAEVEVSFQGQPVPSSLQLQSLVDLWLQTMPTYEVRTCYESSAKDFVMVLSYSRKA. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06290 471 MobiDBLite consensus disorder prediction 142 156 - -
Seca7g06290 471 MobiDBLite consensus disorder prediction 293 311 - -
Seca7g06290 471 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 470 IPR044807 GO:0004842
Seca7g06290 471 Gene3D - 339 468 - -
Seca7g06290 471 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Seca7g06290 471 MobiDBLite consensus disorder prediction 289 330 - -
Seca7g06290 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Seca7g06290 471 SMART ring_2 19 59 IPR001841 -
Seca7g06290 471 SUPERFAMILY RING/U-box 15 70 - -
Seca7g06290 471 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Seca7g06290 471 MobiDBLite consensus disorder prediction 88 110 - -
Seca7g06290 471 CDD RING-HC_PCGF 17 60 - -
Seca7g06290 471 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Seca7g06290 471 MobiDBLite consensus disorder prediction 88 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06290 Seca-Chr7 164034590 164039380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06290 4 394 C3H Transcription Factor Family AT2G30580 32.576 2.25e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06290 K16277 - qsu:112004742 301.597