Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06283 ATGGTAAGAGCTCCTTGTTGTGAAAAGATGGGTTTGAAGAAGGGTCCTTGGTCTCCTGAGGAAGATCAAATCCTCACTTCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCCAAACAAGCAGGCCTGTTAAGGTGTGGTAAGAGCTGCAGACTGCGGTGGATTAACTATTTAAGGCCTGATATTAAGAGAGGAAATTTCACAAATGAAGAGGAGGAAACTATCATTAAGCTGCATGAAATGCTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCATTTGAAGAAGAGGCTGCAACCAAATTCAGATACCAAAAGAGTCTCTAAACCAAAAATCAAACGTTCTGATTCAAATTCAAGCACTATAACTCAATCAGAACCTGCTAGTCTTAATTTCCGTGAGGTGGAGACTACATCAGCATGCACTAGTTCTAGTGATTTTTCATCAGGTGAAAGCAAAAATATCAAGAGTGAAGACATAGAGTCTATGGAGACAATGCCTGAAATTGACGAGAGTTTTTGGTCAGAAGCAGCAATGGATGAAACCCCCACCATGTCATCAAAATCTTTGACAATCTCAAATGAGATACAATTTAATTATGAGGAAACTTTCCAACAGAGTTATGATTCAAACTTTGACGATGGTATGGATTTCTGGTATGACATATTCATCAGAACTGAGGATCCAATAGAATTGCCACAGTTCTGA 762 0.4016 MVRAPCCEKMGLKKGPWSPEEDQILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLQPNSDTKRVSKPKIKRSDSNSSTITQSEPASLNFREVETTSACTSSSDFSSGESKNIKSEDIESMETMPEIDESFWSEAAMDETPTMSSKSLTISNEIQFNYEETFQQSYDSNFDDGMDFWYDIFIRTEDPIELPQF. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06283 253 CDD SANT 69 112 IPR001005 -
Seca7g06283 253 FunFam Myb transcription factor 11 67 - -
Seca7g06283 253 Gene3D - 69 142 - -
Seca7g06283 253 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca7g06283 253 CDD SANT 16 61 IPR001005 -
Seca7g06283 253 MobiDBLite consensus disorder prediction 132 169 - -
Seca7g06283 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca7g06283 253 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 201 - -
Seca7g06283 253 SMART sant 13 63 IPR001005 -
Seca7g06283 253 SMART sant 66 114 IPR001005 -
Seca7g06283 253 Gene3D - 13 66 - -
Seca7g06283 253 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Seca7g06283 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca7g06283 253 FunFam Transcription factor MYB15 68 141 - -
Seca7g06283 253 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca7g06283 253 MobiDBLite consensus disorder prediction 115 183 - -
Seca7g06283 253 MobiDBLite consensus disorder prediction 115 131 - -
Seca7g06283 253 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca7g06283 253 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06283 Seca-Chr7 163939263 163941549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06283 1 253 MYB Transcription Factor Family AT2G31180 51.341 5.15e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g06283 Myb_DNA-binding 7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06283 K09422 - gmx:100807569 417.927