Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06277 ATGACCGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGTTGGCAAATCCAGCATTTTTGCATACTAATGTGGTTACAGCTCCACCAACAGCACCACCACCACCAGCTGCAGAAGACCCAGAGTTGGCTATGGCTATCCATGCATCCCTTCAGCATGCCATGCAGGAAAGGCCAACCTTTCCTGATACCCATCCAAGCTTTGAAGCAAGCTCTTCAATCAGTGGAGTGAATACAAACAAGCATGGTTTTCTGGGTACACCGAATCTGAACACAAATGATAGTGAGTCTGTACATGAATCTGTTCCAGGTGGCAATAGTCAGCATGTCCAGAGCCATGACAATGTCTCTACTGACCATACCACTAGTGGTTTGGATTTCAATCCATCAGCTCCTCCAATTGGTGATGAGATTCCAATTGATGGCCCCATTCATTATCCATCAATTGATTCAAGCCCTGTTGATATATCATCTCCAGTTGTTGAGAAGATACCTAAAGAAGAAGGACAAAATGCTAGTGGAATTGGTTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAGGTGAAAACAAAGAAGTGGGGTTGCCCTGTATGTCGAGCTAAGATAGACCAGGTCATAAAGCTATATCATGTTTGA 705 0.444 MTGNNLHGFLMLAKEFHRLANPAFLHTNVVTAPPTAPPPPAAEDPELAMAIHASLQHAMQERPTFPDTHPSFEASSSISGVNTNKHGFLGTPNLNTNDSESVHESVPGGNSQHVQSHDNVSTDHTTSGLDFNPSAPPIGDEIPIDGPIHYPSIDSSPVDISSPVVEKIPKEEGQNASGIGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYHV. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06277 234 PANTHER OS05G0521000 PROTEIN 171 233 - -
Seca7g06277 234 MobiDBLite consensus disorder prediction 69 132 - -
Seca7g06277 234 ProSiteProfiles Zinc finger RING-type profile. 183 222 IPR001841 -
Seca7g06277 234 SUPERFAMILY RING/U-box 182 228 - -
Seca7g06277 234 CDD RING-HC_XBAT35-like 183 232 - -
Seca7g06277 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 233 IPR013083 -
Seca7g06277 234 MobiDBLite consensus disorder prediction 62 140 - -
Seca7g06277 234 SMART ring_2 183 221 IPR001841 -
Seca7g06277 234 Pfam Zinc finger, C3HC4 type (RING finger) 182 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06277 Seca-Chr7 163890840 163893641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06277 173 231 C3H Transcription Factor Family AT3G06140 33.898 1.94e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06277 - - lang:109354249 295.819