Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06273 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAAAATTGGGAGTGGATCGTTTGGAGAGCTTTACTTGGGTGTTAATATACAAAGTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGGGGAACCGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGCTATTGACCTTCTTGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAATTATCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGACAACTTCTTAATGGGTTTAGGCCGTAAAGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGCGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAAAACCTCACTGGAACTGCTCGGTATGCAAGTGTTAATACTCATCTGGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTGCTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAGTATGACAAGATAAGTGAAAAGAAGATGCTAACTCCAATAGAGGTCTTATGCAAGTCATATCCATTGGAATTCACATCTTACTTCCACTACTGCCGGTCATTGCGGTTTGAAGATAAGCCTGATTACTCATATCTTAAGAGACTCTTCAGGGACCTATTCATCCGAGAAGGCTATCAGTTTGACTACGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCTAGCTCCAGAGCTCGACCAAGTGGGAAACCAGCCATAAACCCAGGACCATCAGGGGAGAGAATAGAAAGGCCTTCAGGTTTCCTCCTCCCACCGCAAGATCTGTTATCTTTTTTTTTCCTCTGGCAATTACTGCTATGCTGA 1041 0.4131 MDHVIGGKFKLGRKIGSGSFGELYLGVNIQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPAINPGPSGERIERPSGFLLPPQDLLSFFFLWQLLLC. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06273 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Seca7g06273 346 CDD STKc_CK1_delta_epsilon 8 282 - -
Seca7g06273 346 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06273 346 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06273 346 PANTHER CASEIN KINASE-RELATED 9 294 - -
Seca7g06273 346 FunFam Putative Casein kinase I 1 85 - -
Seca7g06273 346 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Seca7g06273 346 Gene3D Transferase(Phosphotransferase) domain 1 1 314 - -
Seca7g06273 346 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca7g06273 346 FunFam Casein kinase 1-like protein 1 328 - -
Seca7g06273 346 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06273 Seca-Chr7 163821280 163829084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06273 11 281 MAP Kinase Kinase Kinase AT1G62400 26.950 6.86e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca7g06273 Pkinase 6.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06273 K08960 - gmx:100790721 662.914