Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06243 ATGCTTTATGTTGATGATGTTTCAGGAAAGTGTCAAGTGGAATGTTCCAGTATGAGAGCTAAGAGTTTGACAAGCAAGAGGGAGTTTAGCATTAGAGGGAAATTGATAAAGATGATCAAATGTGTATGGTCGAGGGAGCAGTTAAGTGTAGATGAAAGAAGTTATTCATCAGAGTCCCTGGCAACCAGGGATTATTCAGCAAGTGGTTATTCATCCCGTCCTGGTGACACAGATACAAAGTTGGACAATAGCAACATTGAAGAAGCAGAGTCATCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAAAAAGGTAATACCGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTTCTGCTGTAGTTCCCAAGATGAAAATTTCTATATCTAGAAGATGTGAGCCCAATAAACGCCGTTCACAAAGTGATACAGTGCCTCCTATGTCAATGCATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAGGCTAAATCATTGCAGACTCTTGGAAGGTTTCAAGATGCTGCTCAATCATGCAAAGCTATTTTAGACACTGTTGAATCTGCATTACCAGAAGGCTGGCCTGAAAACTTTGTTTCAGACTGTAAATTACATGAGACTGTAACAAATGCTGTAGAACTGCTTCCTGCGCTGTGGAAGCTTGCTGGCTCTCCTCAAGATGTTATCTCATCATTTAGGAGGGCCTTGCTTTATAATTGGAATCTTGACATTGAAGCCACTGCAAGAATACAAAAGGAATTTACTTTGTTTCTTTTGTACAGTGGTTGTGAAGCAAGCCCTCCTGCTCTCCGCTCTCAATTGGATGGTTCCTTTGTACCAAGAAACAACATAGAGGAGGCTGCTCTTCTGCTTCTGATTCTGCTGAGAAAATCTGTTCTTGGAAACATTGAATGGGACCCTTCAATAATTGATCACCTTTCTTTTGCTCTAAGTGTTTCTGGGGAATTCATGACTCTGGCTCAACAGATTGAGGAATTGCTTCCGGAAACCATGGAGAGTAAAGAAAGATATTATACTCTAGCACTTTGTTACTGTGGGGAAGGTGAGCATATGATTGCTTTGGATCTTTTGAGGAACTTCTTGAATAATAGAGAGAACTTGGACTGCATACAAGAATTACTTTTAGCTTCCAAAATTTGTGCAGACAATATGGTTTGTGTTGAAGAGGGAATCAAATATTCTTGCAAAGCCATTTCTCAGTTGTATGGAAAATGCATGCAAGTGGTGGCTATTGCAAATTGTTTACTAGGTGTTCTACTGTCAGTAAAATCCAGGTCAGTTGGTTCTGAATCAGAGAAGGCTTTGATGCAATCTGAAGCACTCAGTGCTCTAGAAGCTGCTGAGAGAATGATGAGAGAAAATGATCCATACATTGTCCTTCATCTTTGTCTAGAATATGCTGAGCAGAGGAAGTTGAGCATTGCTTTTTATCATGCAAAGAAACTGGTTAAGCTGGAGGGTGGATCTAGTATTACTGGATATATACTACTAGCTAAGATTTTATCAGCTCAAAAAAAGTTTGTTGATGCAGAGATTGTTATTGATGCTGCATTAGATCAAAGTGGAAAATGGGATCAAGGAGAACTGTTGAGAACTAAAGCTAAACTACGGATTGCACAGGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAAGTCCAGAATAAAAGTTTAGGCACTGCAAATAAGATTGTGAAGTATAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTACACAGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTTGCAAAATCCCAAGCTATTAATCCCTACTCTGCTTCTAGATGGCATTCCACAGGTTTACTTTATGAAGCCAGAGGTCTTCATCAAGAAGCTCTGAAATCATTTAGAAAAGCATTGGATATTGACCCCAACCATGTGCCAAGTTTGATATCCACAGCCTGTATTCTCAGACAACTTGGTGGGCAATCATCTTCAATTGTTAGAAGCCTTCTCACCGATGCACTACGGCTTGACAGAACAAACCCATCTGCATGGTACAATCTTGGACTGCTCTACAAAGCTGATTTAGGGACATCAGCACTGGAAGCTATTGAATGCTTTGAGGCAGCGGTTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2247 0.3988 MLYVDDVSGKCQVECSSMRAKSLTSKREFSIRGKLIKMIKCVWSREQLSVDERSYSSESLATRDYSASGYSSRPGDTDTKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNTEAALHVFEGIDISAVVPKMKISISRRCEPNKRRSQSDTVPPMSMHAVSLLLEAVFLKAKSLQTLGRFQDAAQSCKAILDTVESALPEGWPENFVSDCKLHETVTNAVELLPALWKLAGSPQDVISSFRRALLYNWNLDIEATARIQKEFTLFLLYSGCEASPPALRSQLDGSFVPRNNIEEAALLLLILLRKSVLGNIEWDPSIIDHLSFALSVSGEFMTLAQQIEELLPETMESKERYYTLALCYCGEGEHMIALDLLRNFLNNRENLDCIQELLLASKICADNMVCVEEGIKYSCKAISQLYGKCMQVVAIANCLLGVLLSVKSRSVGSESEKALMQSEALSALEAAERMMRENDPYIVLHLCLEYAEQRKLSIAFYHAKKLVKLEGGSSITGYILLAKILSAQKKFVDAEIVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTANKIVKYKGNRDRRLEMEIWHDLANVYTALSQWQDAEVCLAKSQAINPYSASRWHSTGLLYEARGLHQEALKSFRKALDIDPNHVPSLISTACILRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLLYKADLGTSALEAIECFEAAVFLEESSPIEPFR. 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06243 748 SUPERFAMILY TPR-like 457 574 IPR011990 GO:0005515
Seca7g06243 748 ProSiteProfiles TPR repeat profile. 637 670 IPR019734 GO:0005515
Seca7g06243 748 ProSiteProfiles TPR repeat region circular profile. 637 670 - -
Seca7g06243 748 MobiDBLite consensus disorder prediction 65 79 - -
Seca7g06243 748 MobiDBLite consensus disorder prediction 65 84 - -
Seca7g06243 748 Gene3D Tetratricopeptide repeat domain 78 585 IPR011990 GO:0005515
Seca7g06243 748 PANTHER PROTEIN NPG1 39 748 IPR043376 -
Seca7g06243 748 SUPERFAMILY TPR-like 548 718 IPR011990 GO:0005515
Seca7g06243 748 Gene3D Tetratricopeptide repeat domain 586 745 IPR011990 GO:0005515
Seca7g06243 748 Pfam Tetratricopeptide repeat 640 670 IPR013105 -
Seca7g06243 748 SMART tpr_5 169 202 IPR019734 GO:0005515
Seca7g06243 748 SMART tpr_5 707 742 IPR019734 GO:0005515
Seca7g06243 748 SMART tpr_5 511 544 IPR019734 GO:0005515
Seca7g06243 748 SMART tpr_5 603 636 IPR019734 GO:0005515
Seca7g06243 748 SMART tpr_5 637 670 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06243 Seca-Chr7 163531354 163535981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06243 31 748 Calmodulin-binding Proteins AT4G28600 53.479 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06243 K21843 - gmx:100789469 1237.25