Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06241 ATGGGTGATGATAGTATTGATTTAACTACACCAACCAAAGGTTTAAATGATCCAGTTGATACGTTGGAGGAATGGGTTCCAAAGTGTGATGAAGAAATCAAACCTGTAGTTGGCAAAGTCTTTGATACTTTAGAACAAGGAGGGGACTTTTATCAAAGGTATGCACATACTGCTGGTTTTAGTGTACGCAAAGCAACTGAAACAAAAGATAAAAATGGAGAAACAAAGTGGAAATATTTTCTTTGCTCTAAAGAAGGCTTCAAATTAGAAACAAAAGAGGGTGTAACTGAGTTGCTTGTTGATGATAAAAAATTGCCTAAAACCATACGAAGAAAACTAACAAGGGAAGGGTGTAATGCAAGGATTGTTTTTAAGAGGACACAAGAAGGAAAATATGAAGTGGTGCGATTTCATGAAGGTCATACACATGCGTTAGCTACACCTAAAAAGAAGCAGTTCTTAAGATCTGCAAGGAGTATAAATAATGTTCATAAGAATTTATTACATTGTTATAATAGAGCTAATGTAGGCCCTTCAAAAGTGTATCAATTATTGAAAGAGCAGGTTGGGAGTTATGATAGTATAGGATGCACAAAGAGAGATCTCCAAAATTATTCTAGAGACTTGAAAGAGTTAATCAAAGACTCTGATGCACATATGTTTCTTGATAATTTTAGGAGAAAACATGAGATGAACCACTCTTTTTATTATGACTATGAGGTTGATAATGAAGGGAGATTGAAATATGTGTTTTGGGCAGATGTTCTTTGTCGAAAAAATTACTCTTTGTTTGGTGATGTCATTTCATTTGATACAACATACAATACAAATAAATATTGTATGATTTTTGCACCATTCACTGGCATAAATCATCATAGGCAGAGCATAACTTTTGGGGCTGCCTTCCTAGCAGATGAGAAAGTTGAATCATTTGAGTGGTTGTTTGAAACATTTTTGAAAGCAATGGGAGGGCATAAACCTATTGTGATTATAACAGACCAGGACCCAGCCATGAAAATTGCAATTGAGAAGGTTTTCACAGGTTCTTCTCATAGATTTTGCATGTGGCACATACTGAAAAAACTTTCAGAGAAGGTGGGTGTTTCCTTGAATTCCAATGCTGATTTTAACAGTCGTTTTAAGACCTGTGTTTGGAATTCAGAGTCTCCAGATGAATTTGAATTGACTTGGAAAGCTATCATTATTGATTTCAAGTTAGAAGAAAATGGTTGGCTTTCACAAATGTATGACATGCGAAGTATGTGGATACCGGCTTATTTCAAAAGTATTTTTCTAGCTGGAATTTTGAGAACAACCTCAAGATCCGAGAGTGAAAATTCCTTCTTTGGTAATTACTTGAATAAGAACCTTAGTTTGGTGGAGTTTTGGATGAGATTTGATTCTGCACTAGAAGCACAGAGGCATAATGAATTACTTGCAGATAATGATACACTTCATTCTATGCCCGAATTGAAGATGCATAAGGATATAGAGAAACATGGCAGAGAAGTTTACACTCATCAAAATTTTTACATATTTCAAGGTGAGTTATGGAGTGCATGTGTGGATTGTGGGGTTGAAGAAACAAAAGAGGATAATGGGCAATTATTAATTTTTATACTTGAGCAGCTTGTGGTTAATGGCAACAAAGTGAGCAAACATCGGAAAGTTGTTTACAATCCTTCCAATCATATTGCACATTGTTCATGTAAAATGTTTGAATCTGAAGGCATGCCATGTCGACATATCCTTTTTGTATTAAAGGGTAAAGGCTTGAGTGAAATCCCAAGTTATTACATTATTAATAGATGGACCAAATTGGCAACTAGTACTCCAATTTTTTATTATGATGGCAATGTATTGGAGGCATGTTCCAAATTGTTGACTAAGATGAAAGGTGATGTTGGAGCAAGCAAGTTGAATGAATTAGAGTCATTTGTTGGCTCCACTGTACCAAAGAATGTTGACATTCTTCCTCCTCAACCTTCAAATACCAAAGGATGTGGAAAACGGATCAAGGGGGGAAAGGAGAAGGCAATGGAGCAACAACAAAAAAGAACGAGACTTTGTAAAACTTGCCGACAATTTTCATATCATGATAGTCGTAATTGTCCCACAAAATCCTCTTCCTAA 2133 0.3558 MGDDSIDLTTPTKGLNDPVDTLEEWVPKCDEEIKPVVGKVFDTLEQGGDFYQRYAHTAGFSVRKATETKDKNGETKWKYFLCSKEGFKLETKEGVTELLVDDKKLPKTIRRKLTREGCNARIVFKRTQEGKYEVVRFHEGHTHALATPKKKQFLRSARSINNVHKNLLHCYNRANVGPSKVYQLLKEQVGSYDSIGCTKRDLQNYSRDLKELIKDSDAHMFLDNFRRKHEMNHSFYYDYEVDNEGRLKYVFWADVLCRKNYSLFGDVISFDTTYNTNKYCMIFAPFTGINHHRQSITFGAAFLADEKVESFEWLFETFLKAMGGHKPIVIITDQDPAMKIAIEKVFTGSSHRFCMWHILKKLSEKVGVSLNSNADFNSRFKTCVWNSESPDEFELTWKAIIIDFKLEENGWLSQMYDMRSMWIPAYFKSIFLAGILRTTSRSESENSFFGNYLNKNLSLVEFWMRFDSALEAQRHNELLADNDTLHSMPELKMHKDIEKHGREVYTHQNFYIFQGELWSACVDCGVEETKEDNGQLLIFILEQLVVNGNKVSKHRKVVYNPSNHIAHCSCKMFESEGMPCRHILFVLKGKGLSEIPSYYIINRWTKLATSTPIFYYDGNVLEACSKLLTKMKGDVGASKLNELESFVGSTVPKNVDILPPQPSNTKGCGKRIKGGKEKAMEQQQKRTRLCKTCRQFSYHDSRNCPTKSSS. 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06241 710 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 30 631 IPR031052 GO:0006355
Seca7g06241 710 Pfam SWIM zinc finger 566 587 IPR007527 GO:0008270
Seca7g06241 710 Pfam MULE transposase domain 267 361 IPR018289 -
Seca7g06241 710 SMART 26again6 566 593 IPR006564 GO:0008270
Seca7g06241 710 Pfam FAR1 DNA-binding domain 49 146 IPR004330 -
Seca7g06241 710 ProSiteProfiles Zinc finger SWIM-type profile. 555 591 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06241 Seca-Chr7 163501437 163503692 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g06241 FAR1 2.9e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06241 - - mtr:112420857 893.264