LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g06239	ATGAATTCAAGTGAAGAAATTAGTGATCATCATGACACTAGTAGTGCAGGATCAAAACGCTCTTATGAGTGCACATTCTGCAAGAGAGGCTTCACAAATGCTCAAGCTTTAGGGGGTCATATGAATATCCATAGAAAAGACAGAGCCAAGGCCAAGCATAACACACCAAACTCTTCACTTCAAAACAACTTCACCAATGATCAATCCATGCCCCTTCCTTTTGTTTCATCAGAAATTTCAAACCAACCCCCGCATTACTTTAGAAATCAATCTGAACCTGCACCTGCACCTGGGCATGCCTTTCAATATGAGCATCATCATAATCAAAGGTCTCATCCTCACCTTATGTATCTGAACCAAGAGCTTCAGGGTGCCAATTTGAGTCTCCGAATTGGTCCAACTGATCAGAAAGATAATAATGAAGTGGACTTGGAGCTAAGACTTGGTCATGCTCCATAA	459	0.4139	MNSSEEISDHHDTSSAGSKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHNTPNSSLQNNFTNDQSMPLPFVSSEISNQPPHYFRNQSEPAPAPGHAFQYEHHHNQRSHPHLMYLNQELQGANLSLRIGPTDQKDNNEVDLELRLGHAP.	153

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g06239	152	MobiDBLite	consensus disorder prediction	54	88	-	-
	Seca7g06239	152	ProSiteProfiles	Zinc finger C2H2 type domain profile.	22	49	IPR013087	-
	Seca7g06239	152	MobiDBLite	consensus disorder prediction	47	111	-	-
	Seca7g06239	152	Pfam	C2H2-type zinc finger	22	46	-	-
	Seca7g06239	152	SMART	c2h2final6	22	44	IPR013087	-
	Seca7g06239	152	Gene3D	Classic Zinc Finger	2	74	-	-
	Seca7g06239	152	PANTHER	OS07G0101800 PROTEIN	13	151	-	-
	Seca7g06239	152	SUPERFAMILY	beta-beta-alpha zinc fingers	19	48	IPR036236	-
	Seca7g06239	152	ProSitePatterns	Zinc finger C2H2 type domain signature.	24	44	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g06239	Seca-Chr7	163477083	163478198	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g06239	22	149	C2H2 Transcription Factor Family	AT5G43540	36.765	9.44e-16	67.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Seca7g06239		zf-C2H2_6	1.4e-05	CL0361

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g06239	-		-	gmx:102665558	156.377