Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06212 ATGATCACCGACGCCAATAGTAACACCCTCTTCAATCAGTCCTTTGATACAAGCAACAGAGTGAAGGAAGAGGAGGTGAGTTCTGAAGAAAATGGTGGTGATAGCGCCAGGAAGGAGAAGTCGTACCGAGGTGTTAGAAGACGGCCATGGGGGAAGTTTGCAGCAGAGATAAGGGATTCAACGAGACATGGGATAAGGGTTTGGTTGGGGACTTTTGATAGTGCTGAAGCTGCGGCTTTGGCTTATGATCAAGCTGCTTTTTCTATGAGGGGTTCTGCGGCTATACTCAATTTCCCTGTTGAAATTGTGAGGGAATCGTTAAAGGAGATGAATTGTGGTGGGCATGGTGTTGGTGAAACAGAGTGCTCCCCTGTTGTTGCTCTCAAGAGGAAGCACTCGTTGAGGAGGAAAATTGGTGTCAAGAAGAATAATAAAGAAAGAGATGTTGTTATTAGGAGTAATAGGATGGACAATGCTGTAGTGTTTGAAGATCTTGGTGCTGATTACTTGGAACAATTATTGATGTCTTCTGATGAAATCCCTAGTGCTTGGTGA 555 0.445 MITDANSNTLFNQSFDTSNRVKEEEVSSEENGGDSARKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVEIVRESLKEMNCGGHGVGETECSPVVALKRKHSLRRKIGVKKNNKERDVVIRSNRMDNAVVFEDLGADYLEQLLMSSDEIPSAW. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06212 184 Gene3D AP2/ERF domain 40 101 IPR036955 GO:0003700|GO:0006355
Seca7g06212 184 FunFam Ethylene-responsive transcription factor 2 40 101 - -
Seca7g06212 184 MobiDBLite consensus disorder prediction 1 17 - -
Seca7g06212 184 MobiDBLite consensus disorder prediction 18 41 - -
Seca7g06212 184 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Seca7g06212 184 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Seca7g06212 184 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Seca7g06212 184 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Seca7g06212 184 ProSiteProfiles AP2/ERF domain profile. 41 99 IPR001471 GO:0003700|GO:0006355
Seca7g06212 184 PANTHER DNA-BINDING DOMAIN 24 175 IPR044808 GO:0003700|GO:0009873
Seca7g06212 184 SMART rav1_2 41 105 IPR001471 GO:0003700|GO:0006355
Seca7g06212 184 MobiDBLite consensus disorder prediction 1 41 - -
Seca7g06212 184 SUPERFAMILY DNA-binding domain 41 101 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06212 Seca-Chr7 162974836 162975390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06212 35 178 AP2-EREBP Transcription Factor Family AT3G23240 69.444 1.43e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca7g06212 AP2 5.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06212 K14516 - gmx:100790598 231.491