Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06208 ATGGATGAAGAAGGATCAAGGGGAAGGACCAAGGAGGACGGCGGAGATGTCCGGTACCGCGGTGTCCGACGTCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGTGACTCGACTCGGCAGGGTCAGAGGGTGTGGCTGGGAACATTCAACACAGCTGAAGAAGCAGCCAGAGCATATGACAGAGCTGCTTATGCTATGAGAGGTTCATTTGCAATCCTTAACTTCCCAAATGAATACCCTATGTCATCAGGTGCCACTGGTGCTTCATCATCATCTTCTTCTTCAAGGCATGCAAATGCAAATGTGGAAGGCAGTGGAAGACAAGTGTTTGAGTTTGAGTACTTGGATGACAAAGTGTTGGAGGAGCTTCTTGGCTGTGAAGAGAAGAAGAAGAAGAATAAGGGATCCTGA 411 0.5012 MDEEGSRGRTKEDGGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGSFAILNFPNEYPMSSGATGASSSSSSSRHANANVEGSGRQVFEFEYLDDKVLEELLGCEEKKKKNKGS. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06208 136 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Seca7g06208 136 MobiDBLite consensus disorder prediction 81 102 - -
Seca7g06208 136 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Seca7g06208 136 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Seca7g06208 136 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca7g06208 136 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Seca7g06208 136 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Seca7g06208 136 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Seca7g06208 136 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Seca7g06208 136 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Seca7g06208 136 PANTHER DNA-BINDING DOMAIN 13 130 IPR044808 GO:0003700|GO:0009873
Seca7g06208 136 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06208 Seca-Chr7 162906910 162907320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06208 13 131 AP2-EREBP Transcription Factor Family AT3G23230 64.286 2.64e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g06208 AP2 3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06208 - - gmx:100775830 172.17