Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06184 ATGGATTCGGATCAAGGTAAACTTTTCATCGGTGGGATTTCATGGGATACTACTGAGGAGAAGCTGAAGGAGCATTTCAGCAACTATGGTGATGTTATGAACACTTCAGTCATGAGAGAGAAGAACACTGGGAAGCCTAGAGGCTTTGGCTTTGTTGTCTTTGCAGATCCTTCTATTCTCGACAGGGTTCTCGAAGACAAGCATGTTATAGATGGAAGAACGGTTGATGCAAAGAGGGCATTCTCAAGAGAGGATCAACAAATTTCTGTCACTTCTAGGGCCGGAAATCCCAATTCTGGTATGAATTCTGGAAATGGTGGAAATGTCAGGACCAAAAAGATATTTGTTGGAGGGCTGCCTCCTACCCTGACTGAAGAAAAGTTTCGTCAGTACTTTGAATCTTATGGGCATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGACCACGGGGATTTGGTTTTATTTCATTTGATACTGAGGAGGCAGTTGATAGGGTTTTGCACAAGTCATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCTAATCCTGGTGCAAGTGGCCGTATGATGGGTGGTGCTGGAGGTGGTGGTGTTGGAATGGGTGGGTATCAAGGGTATGGGGCTTCTGGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCCCAAAGTGCTGCAGGTGGATTCCCACCTTATGGTTCTTCTGCCTATAGTGCTCCTGGATATGGGTATGGTTCGGCTAATAATGGCATGGGTTATGGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGCTGCAACGTACGGGAATCCCAATGTCCCTAATGCTGCTTATGCTGGTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCTGCTCAGCCTCCCTCTGGTTATGGGTCTATGGGTTATGGGAACACTGCCCCTTGGGGTGCTCCAAGTGGCGGTGCAGGGTCTGGTGGTGGCGGCCCTGGTTCAGCAGCTGCAGGTCAATCCCCTAGTGGAGCTACTGGATATGGGAATCAAGGTTATGGATATGGTGGATATGGTGGGTATGGTGGAAGTGATAGTTCTTACGGGAATCCAGGTGTATATGGTGCTGTTGGAGGGCGCACTGGGAGTACTCCAAATAGTAATGCCAGTGGTCCCGGTGGGAGTGAACTACAAGGTAGTGGTGGCAGTGGAAGCTATATGGGCAGTGGCTATGGGGATGCGAATGGAAACTCAGGTTATGGAAATGCAGCTTGGAGATCTGAACAAGGTCAAGCACCTGGAAATTATGGGACTCCTCAGGGAAATGGTGCCCATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1440 0.4875 MDSDQGKLFIGGISWDTTEEKLKEHFSNYGDVMNTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAGNPNSGMNSGNGGNVRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGVGMGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGSANNGMGYGAYGSYGGATAGYGGPAAATYGNPNVPNAAYAGGPPGGPRSSWPAQPPSGYGSMGYGNTAPWGAPSGGAGSGGGGPGSAAAGQSPSGATGYGNQGYGYGGYGGYGGSDSSYGNPGVYGAVGGRTGSTPNSNASGPGGSELQGSGGSGSYMGSGYGDANGNSGYGNAAWRSEQGQAPGNYGTPQGNGAHGGQVGYGGGYGGAQSRQAQQQ. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06184 479 CDD RRM2_Hrp1p 113 190 - -
Seca7g06184 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Seca7g06184 479 MobiDBLite consensus disorder prediction 382 479 - -
Seca7g06184 479 MobiDBLite consensus disorder prediction 393 455 - -
Seca7g06184 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Seca7g06184 479 FunFam heterogeneous nuclear ribonucleoprotein 1 107 230 - -
Seca7g06184 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Seca7g06184 479 MobiDBLite consensus disorder prediction 84 109 - -
Seca7g06184 479 Gene3D - 107 228 IPR012677 -
Seca7g06184 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 479 - -
Seca7g06184 479 MobiDBLite consensus disorder prediction 337 356 - -
Seca7g06184 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Seca7g06184 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Seca7g06184 479 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Seca7g06184 479 Gene3D - 1 92 IPR012677 -
Seca7g06184 479 MobiDBLite consensus disorder prediction 302 326 - -
Seca7g06184 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Seca7g06184 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Seca7g06184 479 SMART rrm1_1 113 185 IPR000504 GO:0003723
Seca7g06184 479 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06184 Seca-Chr7 162573680 162577907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06184 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.000 2.66e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06184 K14411 - gmx:100811267 628.632