Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06172 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATCATTTGATCTATGGACAGCATCGTTGTGGTAAAGGCCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATAGTTTCTGGTACAGAAGTTCCGATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCGGCAACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAAAGCCGGATCTAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTACCAATCATTTATTAAAAAAAATAAATAAGCTTAATACAAAAGCAGAAAAAGAAATAATACTAACTTGGTCCAGAACATCTACCATTATACCCACAATGATTGGCCATACCATTGCTATCCATAATGGAAAAGAGCACCTACCTATTTATATAATAGATCGTATGGTAGGCCATAAATTGGGAGAATTTGCACCTACTCTAAACTTCCGAGGACATGCGAAAAATGATAATAGATCTCGTCGTTAA 1164 0.4115 MAIHLYKTSTPSTRNGAVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGKAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRTNHLLKKINKLNTKAEKEIILTWSRTSTIIPTMIGHTIAIHNGKEHLPIYIIDRMVGHKLGEFAPTLNFRGHAKNDNRSRR. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06172 387 Gene3D - 1 112 IPR012340 -
Seca7g06172 387 NCBIfam 50S ribosomal protein L2 165 307 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Seca7g06172 387 SUPERFAMILY Nucleic acid-binding proteins 2 123 IPR012340 -
Seca7g06172 387 SUPERFAMILY Translation proteins SH3-like domain 166 305 IPR008991 -
Seca7g06172 387 ProSitePatterns Ribosomal protein S19 signature. 348 372 IPR020934 GO:0003723
Seca7g06172 387 FunFam 50S ribosomal protein L2, chloroplastic 153 228 - -
Seca7g06172 387 MobiDBLite consensus disorder prediction 1 22 - -
Seca7g06172 387 PRINTS Ribosomal protein S19 family signature 328 347 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 PRINTS Ribosomal protein S19 family signature 348 360 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 PRINTS Ribosomal protein S19 family signature 360 375 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
Seca7g06172 387 Gene3D Ribosomal protein L2, domain 3 228 307 IPR014726 -
Seca7g06172 387 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 MobiDBLite consensus disorder prediction 258 285 - -
Seca7g06172 387 FunFam 50S ribosomal protein L2 228 309 - -
Seca7g06172 387 Pfam Ribosomal Proteins L2, RNA binding domain 40 116 IPR022666 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 Pfam Ribosomal protein S19 306 378 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 Hamap 30S ribosomal protein S19 [rpsS]. 288 384 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 ProSitePatterns Ribosomal protein L2 signature. 250 261 IPR022671 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 PANTHER RIBOSOMAL PROTEIN L2 36 307 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 NCBIfam 30S ribosomal protein S19 308 387 IPR005732 GO:0003735|GO:0006412|GO:0015935
Seca7g06172 387 Gene3D - 116 227 IPR014722 -
Seca7g06172 387 SUPERFAMILY Ribosomal protein S19 306 379 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 SMART Ribosomal_L2_C_2 122 285 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca7g06172 387 Hamap 50S ribosomal protein L2 [rplB]. 1 307 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Seca7g06172 387 Pfam Ribosomal Proteins L2, C-terminal domain 166 283 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06172 Seca-Chr7 162418786 162420625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06172 51 267 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 31.330 5.93e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06172 K02886 - cave:30215254 545.814