Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06161 ATGTTGTTTACACTGTTTTTATATCACTGGCTGCAGGATGAAATTTCAAGCCCTCTCAGTGCTAGAATTTTCGAACTTTGTAACCCTGAATTGTTCCCAGAGGCTTTGCAGAATTCTGAGGTTACTTCCAGCTCAAATTGTTGCTATGAAGAGAACTCCTCATATGCCACAAATACATCTTTAGCTGTAGATGTAGAAAATAAATTCAATAGCAATAGCAATACAGTCACCACTCCAACTAGCACCACCACCACCACTACCACTACTACCACCAATAACAACACAACCAACAGTAGTAATCTGTCTATTATCTTTGATTCTCAAGAAGAAATTGACAATGACATCTCTGCCTCCATAGACTTTTCCCTATCTTCAGCTTTCACTGTTCCCACATTTCTCCCAGTCACATCCCAGCAAGAACAATTTGATTTCTCTTCAATGCAGCCTCAGGCCCAACTAGCAGCATGTTCAGTTGTGGAGGGCTTTTCTCAGTATCCCACTGACCATGTTGCACCTCTTATGGGAGCTCCATTACCACCTGTTTTTGAAGAGGACTGCATTAGTTCTGTCCCTTCTTATATGCCTCTGAACCCTTCATCTCCTTCTTGCACTTATCTCAGTCCTGGAATGGCACCATATATGCCTCCTGGACCCCTTACTACTGCTTTATCTTCTGACAGTTCTGGGATATTTGGTAGCAACATTCTTCTTGGTTCTGATCTTCAGTCACAAGAACTTGAATACCAGGGAGAAAATGGTAGAATTTATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCAGACCTTCAGTTTCTTTCTCAGGCACTCAGTTCTGAGAGTCCGCAACTAGTACCTGGGACTGGGAGTTCTGCCACTCTGACACCAGAAATCTCAAATTTGGAGGATTCTACCTTCAAGGTTGGAAAACTTTCAGTTGAGCAAAGGAAAGAAAAGATTCATAGATACATGAAGAAAAGAAATGAAAGAAATTTCAGCAAGAAAATTAAGTATGCATGCCGCAAAACTCTGGCAGATAGCCGACCAAGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGATACCAATAGAACTGCTAGTAGCAATCATGAAGAAGAAGAGGATGAAGAAGTAGTTGTGAAAGATGAAGAAGATATGGTTGATTCCTCAGATATATTGGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAACTATTCCATTCAGTCATGGATTTGA 1245 0.4112 MLFTLFLYHWLQDEISSPLSARIFELCNPELFPEALQNSEVTSSSNCCYEENSSYATNTSLAVDVENKFNSNSNTVTTPTSTTTTTTTTTTNNNTTNSSNLSIIFDSQEEIDNDISASIDFSLSSAFTVPTFLPVTSQQEQFDFSSMQPQAQLAACSVVEGFSQYPTDHVAPLMGAPLPPVFEEDCISSVPSYMPLNPSSPSCTYLSPGMAPYMPPGPLTTALSSDSSGIFGSNILLGSDLQSQELEYQGENGRIYCTDSIQRVFNPPDLQFLSQALSSESPQLVPGTGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDTNRTASSNHEEEEDEEVVVKDEEDMVDSSDILAHISGVNSFKCNYSIQSWI. 415
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06161 414 MobiDBLite consensus disorder prediction 72 93 - -
Seca7g06161 414 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 91 375 IPR045281 GO:0009909
Seca7g06161 414 MobiDBLite consensus disorder prediction 354 373 - -
Seca7g06161 414 Pfam CCT motif 316 358 IPR010402 GO:0005515
Seca7g06161 414 ProSiteProfiles CCT domain profile. 316 358 IPR010402 GO:0005515
Seca7g06161 414 MobiDBLite consensus disorder prediction 354 385 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca7g06161 Seca-Chr7 162351708 162353914 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06161 286 365 C2C2-CO-like Transcription Factor Family AT5G24930 37.647 2.68e-11 62.8
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca7g06161 CCT 5.4e-19 CL0281
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06161 - - aprc:113871720 637.106