Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06143 ATGGAGCAGGAAGAGCACGAAGTGTACGGTGCAGACATTCCCGACGAAGAGGTTGAGATGGACGCAGACATAGAACAGCAAGAAGAAGAACTTGCCCCCAATCATCCAAACAAGGACTTGGAGGACATGAAGAAGAGGTTGAAGGAGATCGAAGAAGAAGCTAGCGCCCTCCGCGAAATGCAAGCCAAGGTTGAGAAAGAGATGGGCGCTGTCCAAGATTCGTCTGGCTCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGGGTGACTATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTGGAGTTTGTTGAGATTGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGAATGAAACAGTATTATGGAAGAAGACCTACTGGTTTCCGATCTAGGAGGCCTTTCATGCCTTCTCCATTCTATCCACCATATGGTTATGGAAGGTTTCCAAGGTATAGAAGACCCACCCGATACAGGCCATACTAG 645 0.4527 MEQEEHEVYGADIPDEEVEMDADIEQQEEELAPNHPNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGSSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPTGFRSRRPFMPSPFYPPYGYGRFPRYRRPTRYRPY. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06143 214 Coils Coil 37 67 - -
Seca7g06143 214 SUPERFAMILY RNA-binding domain, RBD 81 190 IPR035979 GO:0003676
Seca7g06143 214 SMART rrm1_1 91 162 IPR000504 GO:0003723
Seca7g06143 214 MobiDBLite consensus disorder prediction 1 27 - -
Seca7g06143 214 MobiDBLite consensus disorder prediction 62 88 - -
Seca7g06143 214 CDD RRM_II_PABPs 91 162 - -
Seca7g06143 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Seca7g06143 214 MobiDBLite consensus disorder prediction 28 45 - -
Seca7g06143 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Seca7g06143 214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 20 202 - -
Seca7g06143 214 MobiDBLite consensus disorder prediction 1 45 - -
Seca7g06143 214 FunFam Polyadenylate-binding protein 1 84 170 - -
Seca7g06143 214 Gene3D - 11 172 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06143 Seca-Chr7 162125782 162133654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06143 91 162 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.09e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06143 K14396 - gmx:100527139 346.28