Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06119 ATGGGTCGTGGAAGAATACCCATGGAACTCATTCAGAAGGAAAAAGCTCGTAAGGCAACGTTTCTAAAGAGAAAGAATGGCTTGATGAAGAAAGTTTACGAGTTTTCCACTCTTTGTGGAGTTGATGTTTGTCTAATTATTTATGGCCCCAACTTTGATAACCAAAAACTAGTTGAACCTGAAACATGGCCCCAAGACACAAGAGAGGTATACCGTATAATTCAAAAATATTTTGACACCACTAGTGATAGATGTCCAAAGATCTATGGTGTGCAAGAGTATTATCAAGATAGAATGAAAAAGGTTGAAGGTGAGATTTCAAAAATATGCAAAGACAAGCTCAAAATAATGTACCCAACTTGGGATGATTCTTTCAATCCTCTTGGAGAGGAGCAACTAAGGATTTTTGTTAGCTTATTGGATGCAAAGTTTGATGCTTGTAGTCAAAGGATGAATATGCTAAAAGGGAATCACAAGGGAAAAGCAATAGCTGAATCAGATAATATGGTTATGACACTTAGTCCCTACTTAGCCTCAAATTCAAGTAGCTACCTCAATCTCATGCAGAACATTGCTCAACCACAATTTTTCCCTCCCCTTTCAATTAGTGATATTGATAACATTCCATTTCAGCTTGGTGAGAGTTCTCAACCTTCCATGCTTCATTTTGGCCAAAATTATATGCAATTGATGGGGAAAAATGGAATGGTGATGGATTGGGCTGATCAAATTGGTAATGACAACAAAAATGGTATGCTAAAGGAGGATAGAGATGAAAATAATCAAAAGTTGTCGCCAAACTATTATTACAATGGGAATATACAGACAATGCAGCCATATAGTATTGATTTGCAGGCTCTCCCTTCTCAGAACTCACGACTTAATGGACTCTATGGCACAAATATGGTACAATCTCAAATGTTCAACTACATGCAAGGAAGAGAGTAG 948 0.3724 MGRGRIPMELIQKEKARKATFLKRKNGLMKKVYEFSTLCGVDVCLIIYGPNFDNQKLVEPETWPQDTREVYRIIQKYFDTTSDRCPKIYGVQEYYQDRMKKVEGEISKICKDKLKIMYPTWDDSFNPLGEEQLRIFVSLLDAKFDACSQRMNMLKGNHKGKAIAESDNMVMTLSPYLASNSSSYLNLMQNIAQPQFFPPLSISDIDNIPFQLGESSQPSMLHFGQNYMQLMGKNGMVMDWADQIGNDNKNGMLKEDRDENNQKLSPNYYYNGNIQTMQPYSIDLQALPSQNSRLNGLYGTNMVQSQMFNYMQGRE. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06119 315 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca7g06119 315 CDD MADS 2 51 - -
Seca7g06119 315 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Seca7g06119 315 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca7g06119 315 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca7g06119 315 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca7g06119 315 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca7g06119 315 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Seca7g06119 315 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 150 - -
Seca7g06119 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06119 Seca-Chr7 161815734 161816681 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06119 1 150 Type I MADS-box Gene Family AT5G55690 40.397 7.79e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g06119 SRF-TF 1.2e-19 No_clan