Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g06117 | ATGGGTCGTGGAAGAATACCCATGGAACTCATTCAGAAGGAAAAAGCTCGTAAGGCAACGTTTCTAAAGAGAAAGAATGGCTTGATGAAGAAAGTTTACGAGTTTTCCACTCTTTGTGGAGTTGATGTTTGTCTAATTATTTATGGCCCCAACTTTGATAACCAAAAACTAGTTGAACCTGAAACATGGCCCCAAGACACAAGAGAGGTATACCGTATAATTCAAAAATATTTTGACACCACTAGTGATAGATGTCCAAAGATCTATGGTGTGCAAGAGTATTATCAAGATAGAATGAAAAAGGTTGAAGGTGAGATTTCAAAAATATGCAAAGACAAGCTCAAAATAATGTACCCAACTTGGGATGATTCTTTCAATCCTCTTGGAGAGGAGCAACTAAGGATTTTTGTTAGCTTATTGGATGCAAAGTTTGATGCTTGTAGTCAAAGGATGAATATGCTAAAAGGGAATCACAAGGGAAAAGCAATAGCTGAATCAGATAATATGGTTATGACACTTAGTCCCTACTTAGCCTCAAATTCAAGTAGCTACCTCAATCTCATGCAGAACATTGCTCAACCACAATTTTTCCCTCCCCTTTCAATTAGTGATATTGATAACATTCCATTTCAGCTTGGTGAGAGTTCTCAACCTTCCATGCTTCATTTTGGCCAAAATTATATGCAATTGATGGGGAAAAATGGAATGGTGATGGATTGGGCTGATCAAATTGGTAATGACAACAAAAATGGTATGCTAAAGGAGGATAGAGATGAAAATAATCAAAAGTTGTCGCCAAACTATTATTACAATGGGAATATACAGACAATGCAGCCATATAGTATTGATTTGCAGGCTCTCCCTTCTCAGAACTCATGA | 879 | 0.3709 | MGRGRIPMELIQKEKARKATFLKRKNGLMKKVYEFSTLCGVDVCLIIYGPNFDNQKLVEPETWPQDTREVYRIIQKYFDTTSDRCPKIYGVQEYYQDRMKKVEGEISKICKDKLKIMYPTWDDSFNPLGEEQLRIFVSLLDAKFDACSQRMNMLKGNHKGKAIAESDNMVMTLSPYLASNSSSYLNLMQNIAQPQFFPPLSISDIDNIPFQLGESSQPSMLHFGQNYMQLMGKNGMVMDWADQIGNDNKNGMLKEDRDENNQKLSPNYYYNGNIQTMQPYSIDLQALPSQNS. | 293 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g06117 | 292 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Seca7g06117 | 292 | CDD | MADS | 2 | 51 | - | - | |
Seca7g06117 | 292 | Gene3D | - | 13 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Seca7g06117 | 292 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 150 | - | - | |
Seca7g06117 | 292 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Seca7g06117 | 292 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 51 | IPR002100 | GO:0003677|GO:0046983 | |
Seca7g06117 | 292 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Seca7g06117 | 292 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Seca7g06117 | 292 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Seca7g06117 | 292 | SUPERFAMILY | SRF-like | 2 | 88 | IPR036879 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g06117 | Seca-Chr7 | 161783435 | 161784313 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g06117 | 1 | 150 | Type I MADS-box Gene Family | AT5G55690 | 40.397 | 6.30e-29 | 110 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Seca7g06117 | SRF-TF | 1.1e-19 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g06117 | - | - | ccaj:109800518 | 343.969 |