Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06105 ATGGATGAGTTTTTTGATGCTTCATGTGTTAACCTAGATGACGATAATGATGATATTTATGGTAATAGTGATGGGTTTGATGTAAATAACAGTGAAGATAATAATGAATTGGGTGGTCCTAATGTGGTGGAAGAGTTAGGTAACATAGATCATAATAATAAAAGAATAGAAGATATGTCTCCTGATGACATACGAAGCATGGAGTTTGCTAGTGAAGAGCATGGTGGTTTATTTTATCAAGCTTACGCAAAGCGTCATGGTTTTGTTGTTAGGAAAGATGAGGTATGTCGTGATATTAAGGACAATGTTATCATGCGTCAGTTTGTTTGCAACAAAGAGGGGACTAGGAGCAAAAAACATCTCATGAGGGTTGATAGGAAAAAAGACCACAGGCCAATTACACGTGTGCGGTGTCAAGCCAAGCTACGAATTCGCTTAGATTACAAGACAGGTAAATGGAAGGTGGTTTCTTTTGTGGAGACTCATAATCATGAGCTTACCCCTTCTACATTCGTGCACATAATGCCTGGTTATAGAGGGTTGAATGATGCTGATAAAGCTCAAGTAGATAGGTTGCACGCATATGGTGTTAGGACATGCCACATAATGGGGTACATGCTAGATCAAAAGGGGGGATATGGTTCCCTTGGCTTTTGTAGGAAGGACTTGTATAATTATATTGAACGACAGAAGCTTGAAAAGATCAAAGATGGGGATGCACATGCTGCCTTATGCTACATACAGGCAAAGGCAAACAATGATCCCACTCTTCGGTCGAGTTTCGTTGCTTCAGAAGATGGTACTTTGAAGCATTTGTTTTGGGCAGATGGAGGTAGTAGGGCTGATTATTACTGCTTTGGGGATGTTTTGGCATTTGACACGACGTATAAGAAGAATAGATATAACAAGCCCCTTGTCATTTTTTCTGGCTGTAATCATCATGCCCAGACTGTTGTTTTTGGTTGTGCTTTGGTTGCCGATGAGACGATTGAGACTTACAAGTGGCTGTTACAAGAATTCCTCCGTGCTATGTCAGATAAATATCCAGCTGCAGTAGTTACAGATGGGGATAATAGTATGAGAGAAGCTATCAAGCAGGTATTCCCCAATGCATCACATCGCCTTTGTGCATGGCATTTGCACAAAAATGCATGTGAAAATGTCAAGAATTCTGGTTTTTTGGATGATTTCAAGGCAGCCATGTATTCTAATTTCACCGTGGATCAATTTGAGTTGTTTTGGAAGCGAATGGTTGCAAAGCATGGTCTTATGGGAAACAAGTGGGTTTCAAAAACCTATGAAAATAGGTCATTGTGGGCCAGTGCATATTTCCGGGATAAATTTTTTGGCCGTATTAGAACAACATCACAATGTGAGGCAATTAATTCACTGGTGAAGGCTTATGTTAATAAAAAAGATACCATTCTTGAATTTATCAATAGGTTTGAGCAAGTTTTGAGAGAATATAGGAATAATGAGATGATTGCAGATTTCAAGTCTCTATTTACGGAGCCAGTCTTAACAACTTCTCTTAAGGAAAATGAGAGAGAGGCTTCAAAAATATTCACATTAGAGATTTTTAGAGAAGTGAAATCTGAGATTGAGGTTGCAGGTGCTTTGAATGTAAATGAACGTCTGGAACATGGAGATAAACTGAATTTTAAGTTGAACCATTATTGTAATCGTGGCAGTCAATTTGAGGTTGAGTATGATGTTGTGAATTCAAAATTTTTGTGTGAGTGTAGACTGTTTGAGAGTCGAGGAATACCTTGTTCTCATATTATATGTGTCCTAAAAAATGAGAGCATGCAATCCATGCCGAGTAGTTTGATTGTTAAGCGATGGACAAAGAAATGCAAGAGCGATCTTATTTCTATATATCAAGCAGATGATGTGGATAATGATGTCATGAAAGAAGCGCGTTTAGGGGCTGTTGGTGGAGCGTTTCAAAGGTTGGGTTGCATTGCAAAAGAAAAGAAAGAGTACTTCAATGATATAATAAATGATGTTTTGAAGCTAGTTCAGAAATATGAGAGAATCGGGGAACCACATGGCACACAAACCTCACGTGAGAAGATTGTCAAGGATCCACCAGTGGTCAAAACTAAAGGAGCATCACCTAAAAGAAAGTATGGAAGGAAGAGGAAAAGGTGCTCAAATTGCAATAGAACTGGGCACATACTCAAAAGATGTCCTAACCTTTATGGTAGGACTGAGGAGAAGATGGATGAAGACAAATCACCTTTAGGACAGGATGAGGTTGGAAAACTTAACAATATTATAATTTTTTCGTTGATAACATTTTGA 2307 0.3858 MDEFFDASCVNLDDDNDDIYGNSDGFDVNNSEDNNELGGPNVVEELGNIDHNNKRIEDMSPDDIRSMEFASEEHGGLFYQAYAKRHGFVVRKDEVCRDIKDNVIMRQFVCNKEGTRSKKHLMRVDRKKDHRPITRVRCQAKLRIRLDYKTGKWKVVSFVETHNHELTPSTFVHIMPGYRGLNDADKAQVDRLHAYGVRTCHIMGYMLDQKGGYGSLGFCRKDLYNYIERQKLEKIKDGDAHAALCYIQAKANNDPTLRSSFVASEDGTLKHLFWADGGSRADYYCFGDVLAFDTTYKKNRYNKPLVIFSGCNHHAQTVVFGCALVADETIETYKWLLQEFLRAMSDKYPAAVVTDGDNSMREAIKQVFPNASHRLCAWHLHKNACENVKNSGFLDDFKAAMYSNFTVDQFELFWKRMVAKHGLMGNKWVSKTYENRSLWASAYFRDKFFGRIRTTSQCEAINSLVKAYVNKKDTILEFINRFEQVLREYRNNEMIADFKSLFTEPVLTTSLKENEREASKIFTLEIFREVKSEIEVAGALNVNERLEHGDKLNFKLNHYCNRGSQFEVEYDVVNSKFLCECRLFESRGIPCSHIICVLKNESMQSMPSSLIVKRWTKKCKSDLISIYQADDVDNDVMKEARLGAVGGAFQRLGCIAKEKKEYFNDIINDVLKLVQKYERIGEPHGTQTSREKIVKDPPVVKTKGASPKRKYGRKRKRCSNCNRTGHILKRCPNLYGRTEEKMDEDKSPLGQDEVGKLNNIIIFSLITF. 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06105 768 SMART 26again6 577 604 IPR006564 GO:0008270
Seca7g06105 768 SUPERFAMILY Retrovirus zinc finger-like domains 706 739 IPR036875 GO:0003676|GO:0008270
Seca7g06105 768 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Seca7g06105 768 ProSiteProfiles Zinc finger SWIM-type profile. 566 602 IPR007527 GO:0008270
Seca7g06105 768 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 58 650 IPR031052 GO:0006355
Seca7g06105 768 ProSiteProfiles Zinc finger CCHC-type profile. 717 733 IPR001878 GO:0003676|GO:0008270
Seca7g06105 768 SMART c2hcfinal6 717 733 IPR001878 GO:0003676|GO:0008270
Seca7g06105 768 Pfam MULE transposase domain 289 383 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06105 Seca-Chr7 161538768 161541074 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g06105 MULE 9.2e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06105 - - ccaj:109792835 895.575