Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06100 ATGGAAGGACAGAGTAACCAAGAGAACCCTGTGCAGCTAGTGTCTTGTGACACTGGAGGAACCAGCAATGATGTGACTTATTCAGCTGAGGATCATCTAATTCCAAACCCAAAATTTATCATTTCAGCATCTGGAAGGAATGGGAGCCAGTGGACTTGCCTCCCAAAACTATCTCATAATTATGTTGAATATCTTTCAGAATCCTCAACTTTTCTGCCAACTGCTACATCTGAGTATATGATTGGGAGCAATTATCTACCTGTTGGCAGCTTCAACGATGTTAATGGGGTCAATGGAACAGAAAGAAACTTGTTTTACAATGATACAGGAAAATCTTGTGGGTTTAAACCCATTGATTCATCAACTAATGACTTTGAGTTTATGAAGCGTGTGGGGTTTTGGAGACCTGAAGAAGGAGGGGAAGCAATTAAAGTTGAAACTGAGAGTAGTCAGAATCTTCTTTATCCTGAGAGCCATGCTGCATGGACAGCAAATTCAGTTGAAGATAAGCATAATGCTTCACAACTTGATCCAATGGTAATGGTTGGTGCACCTGCTTTCCTCCCCAAACCAGGATGCAGCCCCTCAAAACAGAAAAGTGAGAAAACACGTGTCACCGACCGTCAACGCAGGCAACGTATCGCTGAAAACCTCAAAGCCTTACATGAATTGCTTCCAAATCCAGCTGAGGGTAGTCAAGCGTACATATTGGATGATATCATTGACTATGTCAAATATTTGCAGCTTCAAATAAAGGAACTAAGTGGAAGTAGATTGCAAGCTGACACAAATGCTATACCACTCATTTTTCATGAGGGTTATGGCCATTATACCAACCAACAGATGCTGAGTGAACCCCTTGAAGAGATAATGGGGAAACTACTTGAAGAGCATCCAGCAGCAGCTAGTCAGCTACTTGAAAATAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGACTTGAGCCAAGCTATGCAAGTGTTTGGCGAGTGA 996 0.4227 MEGQSNQENPVQLVSCDTGGTSNDVTYSAEDHLIPNPKFIISASGRNGSQWTCLPKLSHNYVEYLSESSTFLPTATSEYMIGSNYLPVGSFNDVNGVNGTERNLFYNDTGKSCGFKPIDSSTNDFEFMKRVGFWRPEEGGEAIKVETESSQNLLYPESHAAWTANSVEDKHNASQLDPMVMVGAPAFLPKPGCSPSKQKSEKTRVTDRQRRQRIAENLKALHELLPNPAEGSQAYILDDIIDYVKYLQLQIKELSGSRLQADTNAIPLIFHEGYGHYTNQQMLSEPLEEIMGKLLEEHPAAASQLLENKGLFLLPMALVDDLSQAMQVFGE. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06100 331 SMART finulus 204 253 IPR011598 GO:0046983
Seca7g06100 331 Pfam Helix-loop-helix DNA-binding domain 204 248 IPR011598 GO:0046983
Seca7g06100 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 260 IPR036638 GO:0046983
Seca7g06100 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 318 - -
Seca7g06100 331 MobiDBLite consensus disorder prediction 190 209 - -
Seca7g06100 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Seca7g06100 331 CDD bHLH_AtbHLH_like 206 255 IPR045239 -
Seca7g06100 331 Gene3D - 196 266 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06100 Seca-Chr7 161474963 161478207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06100 198 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 41.538 4.87e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g06100 HLH 5.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06100 - - cam:101507064 436.032