Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06051 ATGAAAGATCAAGATCAGCCTCCCAAAACAGAGATGAAATATCAAGATCAGTCACCACGTAAGCGTGGAAGACCCCCCAAGGCTGGCCATCAAAACCACCACCTGACAATGGTACATAATAGAAAAGGAAAGGTGGGCATTCGAAAAGGTAAAGAAGATTTAACTATAAGAGATGGTGCAAATGTGAATGCAATTGATGATGAGCGATGTGGGAGATCATCTGGTAAAGCTTTAAAAAAGAAAGGTTTTTCTCTTACCAAGAAGAATAAATTGGGAAAGGTTTTGAAAACTGAGGACAATGGGGCGGCCTCACCGTTGAGATCAAGTACTGTGAATGCAGTTGTTTCTGAGAAAAGTGGAAAGAATAAAGTAAAGCAGTTAGTGAGGGATCAAATAATGGAACGGCTTTCAGCTGCAGGCTGGACAGTTGACTACAGACCTAGGAATGGCAGACAGTATAAAGATGCAGTGTATGTTAGTCTAGACGGAAAGACACACTGGTCAATCACCTTGGCCTACAATAGGCTTAAAAGGCATTATGAAGCAGGTGACGGTGAAGGTAAGGTATACAGGCCAGGTTTCAAATTTACACCAATACCAGAAGAAGATTTCCATATACTAACTAAAGTAATAGTAAAGAAAAGAGAAAGTAAAGGTAAAGGGGTGCCAGCTGGGGGAAAGGGTGGAAAGACAGTTGATGGAATCAATAAAAAAGAGAAAAAAGAAAAACCAAGTTCTGCTGCAGGCATGCGTAAGGCAGTGAAGGGGAAAATGAAAAGGAAATGGTCACTTCTTGAGGAGGGCAATGCAAATGTTACTTCACCTAACAAGATGCCAGCTGTGGTCAGGGATCATAAGCGACACAAAACACAAAACAAGAAGCGATGTGCTCTGTTGGTTCGCAATGCTAAGGAGGAGGTAGATTCAGAAATTGATGGATATGTGCCGTACAGTGGGAAACGAACTGTGCTTGCCTGGATGATTGATTTGGGCACATTTTTCCAAAATCAGAAGGTTCATTATATGCAACACGAATGGAAACTGGATGGTGAGATCACAAGAGATGGCATTCATTGTGCATGCTGTAATGAAATCGTAACAATTTCAGACTTTGGAGCTCATGCAAGCAGCACTCACTCTGATCCTCTTAAATATATATATAGAGAGGAAGGAACTTCCCTCTTACAGTGCCTGCTAGATTCTTGGAATAAACAAGATGAATTTGAACGTAAAGGTTTCCATTTTGTTGATGTTGCGGGTGACGATCCAAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCAACATTCCATCAAAGCTGCTTGGATATAAAAAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGCTGTTGCAAGTTTTGTGGGTTGGTTGACAGAAGTTCAAACCAAAGGGATGTCTATGATGATTTTACTGTGTCTACGTTGCACACATGCCATTTATGCGAGGAAAAATATCACAGATCCTGTATTGAGGCAAATGGTGCCAAGACTAATGATTCCAGGGATGCCTTTTGTGGAAACAAATGCCAAGAGTTATCTGAGAAACTTGAGTTGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGTACTTTTGTTCGGCGGTCAGATGTTGGCTTTGATGCTTCTCAGATAAAAACTCAGATGGTTGAATCTAATGCCAAGCTGGCTCTGGCATTATCAATAATGGATGAGTGCTTCATGCCGTATATCGATCAAAGAAGTGGGATTAATCTGATCCACAGTATTCTATATAATTGTGGGTCAAACTTCAAACGTCTGAACTATAGTGGGTTTGTAACTGCCGTTCTAGAGAGAGGTGATGAGATCATCTCTGCTGCATGTATCAGAATCCATGGGAACCAACTTGCAGAGATGCCGTTTATCGGGACCCGCAATATGTATAGGCGACAAGGAATGTGCCGTCGGCTTCTAAATGGCATTGAATGGGCACTCAGCTCTTTAAATGTTGAGTTATTGGTCATACCAGCCATCTCAGAACTCAGAGAAACTTGGACTAATGTTTTTGGGTTTGAGCCACTGGAATTGACTAGCAAACAAATAATAAAGAACATGAATCTGTTGGTATTCCCTCACGTAGATATGTTACAGAAGAAGATATCAAAGCATAAATTCGCTGATAAAGATTTTATTCCCACAGAAGTTTCCAATCTTAAGAAGAATCATACTCTACACAAGGTAGAAAATTGGGATGGGACAGGCTCAGTGAATACATCTCCAAAAGTGGTCACATGTCAAGTTGAATGTCAGGCTGTTCATGAAGATTTGGCAGTGGACGACAAAAGTACTGCAAATGCCTGTAAGAATGTGATTGATTCTTGTTGTCAAGCTGAAGATACAAATACAAGTAAGAATACTAGTTATGATTGCGTCTCGCTGAACCATGTTGAGAAGCCAATAGATTTAAACAGCCAATCGAACAATTGTTGTGTTCCTTATGAGGAAAGGCAATGTCTGAGTATCTCTCGCACTGACACTGAAGCTACTGATAGACATGATGTTGATGCTCTGCTGGAGGTTACTGAAAACTTTCCCATTGAGGTCAAAGTAGCATGTGAGGTTGTTTCAAATAACAACACTACTGAAAATTCTGCACCCTGTGGGACGGAAAGTATTCCTATTGAATCACAAATTGTGTTTACTACAAGGGAATCACAAAATTCTGCTGACAATATACACCATGATTCACATAAGGTTTCTGACAGTTGTGAACTGAGAAGCAAGACTGATTGTGTTCAACTGTACTTTATAGGATCAAAAGAAGTAGATACTGAACCTGTTAATGGCAGCAGTTCTCATTCTAGACCCAATGGTGATGGTGCCTCTGGTGAAGCAATTTCTACAACCAACAGCTTGATGGACGTTACATCACAGAACATTACCAAAGGTTTGCCTGTTAATTGTGAAAAAAATTCTAGTGTTGTTAGTGTGCCAAATGCTGCTGATGAAGCAGAATTATGTACTGCCAAAACATCCATTCTTCAGACAGACATAACTCGTGGAGATTGCCAATCCATACAAATATCTTCTGATATTTGTGGGAAGATTGCACATGGTGTCAATGAAAGGGATAAAGCATCTAGCCAAGCTGTGGCCGATTTCCTTCCTGCTGATACAGACGTAGTTCCCAAAACTAAACCCTGGATGGAGGGGTCTTCAGAACTAGCTGAGCCTGATTTGCAGGTTGATCAAACTGCAAGGAGCAATGGGACATCCTTGAGGGGCCTGAACACAGCTTCTGGTGCGACTCTTCACTGGGCATCTGCTGGCAGTACTTCATGTGGTAGTACTGAGGGGATAGTTCTGTCAAACCAAGCCAGTTAA 3405 0.4126 MKDQDQPPKTEMKYQDQSPRKRGRPPKAGHQNHHLTMVHNRKGKVGIRKGKEDLTIRDGANVNAIDDERCGRSSGKALKKKGFSLTKKNKLGKVLKTEDNGAASPLRSSTVNAVVSEKSGKNKVKQLVRDQIMERLSAAGWTVDYRPRNGRQYKDAVYVSLDGKTHWSITLAYNRLKRHYEAGDGEGKVYRPGFKFTPIPEEDFHILTKVIVKKRESKGKGVPAGGKGGKTVDGINKKEKKEKPSSAAGMRKAVKGKMKRKWSLLEEGNANVTSPNKMPAVVRDHKRHKTQNKKRCALLVRNAKEEVDSEIDGYVPYSGKRTVLAWMIDLGTFFQNQKVHYMQHEWKLDGEITRDGIHCACCNEIVTISDFGAHASSTHSDPLKYIYREEGTSLLQCLLDSWNKQDEFERKGFHFVDVAGDDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDIKKFPSGDWHCIYCCCKFCGLVDRSSNQRDVYDDFTVSTLHTCHLCEEKYHRSCIEANGAKTNDSRDAFCGNKCQELSEKLELLLGVKHEIEDGFSCTFVRRSDVGFDASQIKTQMVESNAKLALALSIMDECFMPYIDQRSGINLIHSILYNCGSNFKRLNYSGFVTAVLERGDEIISAACIRIHGNQLAEMPFIGTRNMYRRQGMCRRLLNGIEWALSSLNVELLVIPAISELRETWTNVFGFEPLELTSKQIIKNMNLLVFPHVDMLQKKISKHKFADKDFIPTEVSNLKKNHTLHKVENWDGTGSVNTSPKVVTCQVECQAVHEDLAVDDKSTANACKNVIDSCCQAEDTNTSKNTSYDCVSLNHVEKPIDLNSQSNNCCVPYEERQCLSISRTDTEATDRHDVDALLEVTENFPIEVKVACEVVSNNNTTENSAPCGTESIPIESQIVFTTRESQNSADNIHHDSHKVSDSCELRSKTDCVQLYFIGSKEVDTEPVNGSSSHSRPNGDGASGEAISTTNSLMDVTSQNITKGLPVNCEKNSSVVSVPNAADEAELCTAKTSILQTDITRGDCQSIQISSDICGKIAHGVNERDKASSQAVADFLPADTDVVPKTKPWMEGSSELAEPDLQVDQTARSNGTSLRGLNTASGATLHWASAGSTSCGSTEGIVLSNQAS. 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06051 1134 CDD PHD1_AIRE 428 467 - -
Seca7g06051 1134 SMART PHD_3 469 528 IPR001965 -
Seca7g06051 1134 SMART PHD_3 427 468 IPR001965 -
Seca7g06051 1134 ProSiteProfiles Zinc finger PHD-type profile. 425 470 IPR019787 -
Seca7g06051 1134 MobiDBLite consensus disorder prediction 951 973 - -
Seca7g06051 1134 SUPERFAMILY FYVE/PHD zinc finger 420 473 IPR011011 -
Seca7g06051 1134 MobiDBLite consensus disorder prediction 1 34 - -
Seca7g06051 1134 MobiDBLite consensus disorder prediction 232 248 - -
Seca7g06051 1134 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 565 727 IPR000182 GO:0016747
Seca7g06051 1134 MobiDBLite consensus disorder prediction 218 253 - -
Seca7g06051 1134 PANTHER PHD FINGER PROTEIN 12 108 909 IPR042163 GO:0003714|GO:0045892
Seca7g06051 1134 Pfam Tify domain binding domain 350 399 IPR032308 -
Seca7g06051 1134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 528 IPR013083 -
Seca7g06051 1134 MobiDBLite consensus disorder prediction 950 973 - -
Seca7g06051 1134 MobiDBLite consensus disorder prediction 1 23 - -
Seca7g06051 1134 ProSitePatterns Zinc finger PHD-type signature. 428 467 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06051 Seca-Chr7 160818779 160828603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06051 20 734 PHD Transcription Factor Family AT5G36670 41.944 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06051 - - lang:109346644 1338.94