Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06033 ATGTCATGTATTGATGCAGGTGACTTTGGTCTTGCTAAAATGTTGACATGTGATGATCTTGCTTCCTCAGTCGTAGGGACTCCAAGTTATATGTGCCCAGAGCTCCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGATATGCAAGCATTGATTAACAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACAGTGTATTCTAGTTCTTTTCGAGGCCTTGTGAAGAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAAGTGCTGCAGAGTTACTAAACCATCCACATCTTCAACCTTATATTCTTAAAGTCCATCTAAAACTAAATAACCCCAGAAGAAGTACTTTTCCATTTCAATGGCCTGGCTCAAACTATGCAAGGAGAGCTCAGTTTATAGAGCCAGAATCTGTTTCCACTCTTTCTGACAGAGATAAAAGATTATCATTCAGTAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAATTAGGTTCTCTGTGTTCTACTCAAAGAGCACGAGGATTCTCTGCTTGTTCGAAAGAGAAACACTATGAACTATCTGTTGGCTGTGTTAGTGAAGAATGCAATCGTAACAAGTCAAAAGACACTAAGCTGTCAGCTGTTGATAGGACCATTAGGACACCAAGACTGAGAGCAGCCAAGGAACCTGCCACCCCCCGACGATACACATTACCATCAAAGATATCCCATACTGGTTCCAAGCGTGATTCACTTCCAGCATCTTCTACTCCAGCTGGTAAATTTACGCCACCAACTCGCAGAGCTTCCCTTCCACTTCCTACGAGATCCATGGCCACAACCACCCCTTATAGAGCCAATATTGGTCTTCTTCAAAGTGTGGACTCTCCTGATATTTCTGTTAATGCACCACGAATTGACAAGATTGCTGAATTCCCTTTGGCCCCTGGTGAGGATCCCCTCTTCCCTGTCCGTGGAACTTCATCAACATCAGCTCAGTGCTCTTCTGGTGGTTCCTTAAGGAGTACTGACTGCTTAATCACAAAGGACAAGTGTACAATCCAGGTTGTGGACAAAGGTGTCCCTACCAGTGGCAGTGATGCTCATGCTTGTCCTGGTACTGTAGTTTCATACGGCAATGAATGCTCTGAACATGTGACAACTGCTGTTTCAAGCCATTCCTCTGCTGAGTCTCGTCAGCGCAGGTTTGACCCTTCGTCTTACCAGCAACGTGCGGAGGCATTGGAGGGGTTGCTTGAGTTCAGTGCGCGGCTCCTACAACAACAGAAGTTTGAAGAGCTTGGGGTGTTGTTGAAGCCATTTGGGCCTGAGAAGGTATCTCCAAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAAGAAACTGTGGTCTAA 1443 0.4484 MSCIDAGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSSSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFQWPGSNYARRAQFIEPESVSTLSDRDKRLSFSNDRALNPSISGTELGSLCSTQRARGFSACSKEKHYELSVGCVSEECNRNKSKDTKLSAVDRTIRTPRLRAAKEPATPRRYTLPSKISHTGSKRDSLPASSTPAGKFTPPTRRASLPLPTRSMATTTPYRANIGLLQSVDSPDISVNAPRIDKIAEFPLAPGEDPLFPVRGTSSTSAQCSSGGSLRSTDCLITKDKCTIQVVDKGVPTSGSDAHACPGTVVSYGNECSEHVTTAVSSHSSAESRQRRFDPSSYQQRAEALEGLLEFSARLLQQQKFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06033 480 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 436 - -
Seca7g06033 480 MobiDBLite consensus disorder prediction 254 279 - -
Seca7g06033 480 Pfam Protein kinase domain 7 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06033 480 SMART serkin_6 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06033 480 Gene3D Transferase(Phosphotransferase) domain 1 3 160 - -
Seca7g06033 480 MobiDBLite consensus disorder prediction 241 290 - -
Seca7g06033 480 SUPERFAMILY Protein kinase-like (PK-like) 7 177 IPR011009 -
Seca7g06033 480 ProSiteProfiles Protein kinase domain profile. 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06033 Seca-Chr7 160566869 160570853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06033 4 120 MAP Kinase Kinase Kinase AT1G53570 37.815 4.82e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca7g06033 Pkinase 2.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06033 K08857 - gmx:100810347 791.956