Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06028 ATGAGGACTTTCTTCACTGCAGAATCATGTAAAGAAGCGCACCCAAATGCTCTAAATCCACAGTCCTGGCTCCAAGTTGAAAGAGGGAAGCTTCCCAAGTTGTCTTCACAGTCCTCCTCTACATCAATAGAATCTGTAATCAAGGTCCCACAACCACCTATTCTCCCATTCTTTAAACCTGTTGATTATGTGGAAGTTTTAGCTCAAATCCATGAAGAACTTGAGTCTTGTCCTCCACAGGAGCAGTCAAGTCTATTTTTGTTGCAATATCAAGTCTTTAGGGGCCTTGGGGACATTAAATTGATGCGAAGAAGCCTCAGGGAAGCTTGGCAGAGAGCCAAAACTGTTCATGAGAAGATTATATTTGGGGCATGGTTGAAGTATGAGAAGCAAGGGGAAGAGCTAATTGCTGGCTCGCTCACAGGTAAATGTGAAAAGGAATATGGACCCATAGATGTAGAATCTCATATTATTTTTGATGTAAATGTACGTTCCCAGGAGAGAGTTTTGATGAATGGGGACCACACTTCACATGTTATTTTTACTATTGGAAATGAGAAGATAATTTGTGATAGACGAAAAATTTCTGAGCTTTCAACACCATTTCATGCAATGCTGAATGGGTGTTTCAGGGAATCATTTTCTGAGGCCATAGATTTGTCTGAAAACAATATCTCTCCTTCAGGTATGAGGGCAATAAGTTATTTCAGTTTGACAGGCCATTTACTTGAGGTCCCTCCAAATCTTTTGCTGGAGATATTAGCTTTTGCCAACAAGTATTGTTGTGATAGACTCAAAAAGGCTTGTGATAAAAAACTTGCATCCTTGGTTTCCTCCAAAGAGGATGCTGTGGAGCTCATGGAATATGCTCTTGATGAGAATTCAGCTGTCCTTGCAGCTTCTTGTTTACAAGTCCTTTTACGCGATCTTCCCAACTGCTTGAGTGACAATCAGGTGGTGGAGTTATTTGTTCATGCTAATAGGCAGCAGTTGGCAATCATGGTTGGGCCAGGTTTATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCAGACACAACAGCTCATTTCCTGGAACGGTTAGTTGATTTTGCTGAAAATGACAAGCAAAGACTGCTGGCATTTCATCAATTGGGATGTGTAAGACTCTTAAGGAAACAATATGAAGAAGCTCATCGCCTTTTTGAGGAGGCTGTAAATGCAGGTCATTTTTATTCTGTTGCTGGTTTAGCTAGACTGGACTATATAAAGGGTGAGAAGCTTTTAGCTTATGAGAAGATCAGCTCAGTCATTTCCTCTGTTACACGACCTGGATGGTTGTACCAGGAAAGATCACTATACTGTGATGGAGATTTGAGGTGGAAAGACCTTGAAAAAGCAACTGAACTGGACCCTACTCTTGTATATCCCTACATGTATAGGGCTGCTTCTTTAATGAAGAAGGAGAATTCTCAAGGTGCACTGGCTGAAATCAATCGGATTCTTGGCTTCAAACTTTCATTAGAATGCTTGGAGCTACGGTTTTTAATCTATCTGGCTCTTGAGGACTACAAAGCAGCCCTCCGTGATGTTCAAGCAATTCTTACTCTGTGTCCGCATTATAGAATGTTTGAGGGGCGCGTTGCTGCATCTCAACTTCGTACTCTTGTGCGTGAGCATGTTGAACGTTGGACAACAGCAGATTGTTGGGCACAATTATATGACTGTTGGTCTGCTGTTGATGATATTGAGTCTCTATCTGTTATTTACCAGATGCTTGAATCTGATGCAGTAAAAGGTGTTCTATACTTCAGACAGTCACTGCTTCTCCTCAGGCTAAACTGTCCTGAGGCAGCTATGCGGAGTTTACAGTTAGCTTGGCAACATGCATCAAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCTTGTATGATACAGGTCATTACAAGGAAGGCCTCCGAAAAGCTGAAGACTCTCTTAGTATTAAAAGGTCTTTTGAGGCCTACTTCCTGAAGGCCTATGCATTGGCCGACTCTACTCAAGATTCATCATGTTCTTCAACTGTTATTTCACTTCTGGAAGATGCCTTGAGGTGTCCTTCCGATAATCTGCGCAAAGGTCAGGCCCTGAACAATCTTGGAAGTGTTTTTGTTGACTGTGGGAAATTGGACTCAGCAGCTGATTGCTATATCAAAGCCCTTAATATTCAGCACACCCGAGCTCATCAGGGTCTTGCTCGTGTTCATTTTCTCAAAAATGATAAGGCTGCTGCTTACAAGGAAATGACCAATCTTATTGAGAAGGCTAAAAACAATGCATCAGCATATGAGAAGAGGTCTGAGTATGGTGATCGCGAACACACAAAAGCAGATCTGGAGATGGTGACTAGATTAGATCCACTTCGGGTGTATCCTTATAGATATCGAGCAGCAGTTTTGATGGACAACCATAAGGAAGATGAAGCCATTGCTGAACTGTCGAGAGCAATTGCATTTAAAGCTGATTTGCACCTCTTACATCTACGTGCAGCATTCCATGAACACAAGGGGGATGTCTTAGGTGCTCTAAGAGACTGTCGTGCTGCACTCTCAGTGGACCCAAACCACCAAGAAATGTTGGAACTTCACACTCGTGTTAATAGCCATGAGCCTTGA 2655 0.4207 MRTFFTAESCKEAHPNALNPQSWLQVERGKLPKLSSQSSSTSIESVIKVPQPPILPFFKPVDYVEVLAQIHEELESCPPQEQSSLFLLQYQVFRGLGDIKLMRRSLREAWQRAKTVHEKIIFGAWLKYEKQGEELIAGSLTGKCEKEYGPIDVESHIIFDVNVRSQERVLMNGDHTSHVIFTIGNEKIICDRRKISELSTPFHAMLNGCFRESFSEAIDLSENNISPSGMRAISYFSLTGHLLEVPPNLLLEILAFANKYCCDRLKKACDKKLASLVSSKEDAVELMEYALDENSAVLAASCLQVLLRDLPNCLSDNQVVELFVHANRQQLAIMVGPGLFALFCFLSEVSMNLNSSSDTTAHFLERLVDFAENDKQRLLAFHQLGCVRLLRKQYEEAHRLFEEAVNAGHFYSVAGLARLDYIKGEKLLAYEKISSVISSVTRPGWLYQERSLYCDGDLRWKDLEKATELDPTLVYPYMYRAASLMKKENSQGALAEINRILGFKLSLECLELRFLIYLALEDYKAALRDVQAILTLCPHYRMFEGRVAASQLRTLVREHVERWTTADCWAQLYDCWSAVDDIESLSVIYQMLESDAVKGVLYFRQSLLLLRLNCPEAAMRSLQLAWQHASSEHERLVYEGWILYDTGHYKEGLRKAEDSLSIKRSFEAYFLKAYALADSTQDSSCSSTVISLLEDALRCPSDNLRKGQALNNLGSVFVDCGKLDSAADCYIKALNIQHTRAHQGLARVHFLKNDKAAAYKEMTNLIEKAKNNASAYEKRSEYGDREHTKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEDEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLGALRDCRAALSVDPNHQEMLELHTRVNSHEP. 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06028 884 Coils Coil 752 779 - -
Seca7g06028 884 SUPERFAMILY POZ domain 163 274 IPR011333 -
Seca7g06028 884 Gene3D Tetratricopeptide repeat domain 781 883 IPR011990 GO:0005515
Seca7g06028 884 SUPERFAMILY TPR-like 332 501 IPR011990 GO:0005515
Seca7g06028 884 SUPERFAMILY TPR-like 691 875 IPR011990 GO:0005515
Seca7g06028 884 PANTHER ETO1-RELATED 1 883 IPR044631 GO:0010105
Seca7g06028 884 SMART BTB_4 177 277 IPR000210 GO:0005515
Seca7g06028 884 Gene3D Tetratricopeptide repeat domain 337 585 IPR011990 GO:0005515
Seca7g06028 884 SUPERFAMILY TPR-like 460 777 IPR011990 GO:0005515
Seca7g06028 884 SMART tpr_5 507 540 IPR019734 GO:0005515
Seca7g06028 884 SMART tpr_5 378 411 IPR019734 GO:0005515
Seca7g06028 884 SMART tpr_5 838 869 IPR019734 GO:0005515
Seca7g06028 884 SMART tpr_5 707 740 IPR019734 GO:0005515
Seca7g06028 884 SMART tpr_5 803 836 IPR019734 GO:0005515
Seca7g06028 884 Gene3D Tetratricopeptide repeat domain 598 770 IPR011990 GO:0005515
Seca7g06028 884 ProSiteProfiles TPR repeat profile. 707 740 IPR019734 GO:0005515
Seca7g06028 884 Pfam BTB/POZ domain 170 273 IPR000210 GO:0005515
Seca7g06028 884 Gene3D Potassium Channel Kv1.1; Chain A 167 317 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06028 Seca-Chr7 160513080 160517763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06028 708 871 Glycosyltransferase AT3G04240 27.011 3.92e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca7g06028 BTB 1.1e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06028 - - gmx:100785039 1546.18