Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06023 ATGAAGACGACGAAGATTTCAATTTCATCCCAACACCTATTATTGGCGTTAGGGTTTCTGTTTTCTGCCACAATTCCCTTCGCTCACGGGGAATCATCTACGTGCTTGACGGTCTACAAGAACGGCGGTGCTCCGGCGGTGTTCCAATCCCCAAAATGCCCCCGCTGGAAGCTCTCCGATTACGATTCTCCCCCCAAAACCACCGCGCGTTGCCAGTCCGCTGTGCTCCAGGGCCGCAGAAACTCTCAAGAGGATCGCACTCTCTGCGTCCTCGATCTTCGTATTCCCTTCCCCAGTGCGGTCGGGATCAAGGAGGTTGTGGTTGGGATTATGGCCGTTTTCGATGGTCATAACGGCGCAGAAGCTAGTGAGATGGCATCGAAACTTTTGGTGGAGTATTTCGTTCTGCATACTTATTTTCTCCTTGATGCAACGTATTCTGTTGTATCCAAGACGTCGACAGGAACATTGCTTAACAAGAGAGATCCTGACCACGTAAATATATTGCGTAGATGGAAAGAGATTCTAGGTTGGCAATGGCATGAACTGCATCCTGAAAGGTTTCAGAATACATTTTCTGCAGATTTTGATGATACTTTTCACTTGGAAATTTTGAAGGAAGCATTGTTGAGAGCGATCCATGATATTGATGCAAAATTTTCTGAGGAAGCCTTTAGAAATAGTCTTCATTCAGGATCTACGGCAACCGTTGTATTGGTTGCAGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCTTCTTGTGCTCTGAAAATTTTCAGTCTCCTAGAGAGGCTAAAGCCTCATTGTTAAAGCTATACAGGCAGAAAGAGTATGAAGGTTCTGTTTCCGTGTGGGATCGTGAAAAGTACAGGTTGGCTTCTTCCCATGGACTCACTCATTTTGCAGTAAAGGAATTGACCAGTGATCATCATCCTGACAGAGACGATGAAAGAATTCGAGTGGAATCATCTGGTGGTCAAGTTCTAAATTGGGGTGGTTTACCACGTGTAAATGGTCAGCTGGCTATTACACGGGCTATTGGTGACGTGTTCTTTAAAAGTTATGGTGTTATATCTACACCAGAAGTGACTGATTGGCAACCTCTGACTGCTAATGATAGCTATTTGGTGGCTGCATCTGATGGTGTATTTGAGAAGATGAGTGTGCAGGATGTCTGTGATTTGTTGTGGGAAATACACCGTTACAGTAGCATGAGATCAGAGTGTACCCCTTCATCTTCCTACTCATTGGCAGATTTTATTGTTAATAATGCCTTCAAAAAGGGCAGTATGGACAATATGGCAGCAGTTGTCGTTCCTCTGGAATCTGCCAAATCTTCTGCAAACTCACCCAGAAGCTATACTGAAAAGAGGGATTCAGGTTTCCCATTGTTTGGTCTGCAGGATCCTGCTTCCAGGAGCTCAGCTAATGACATCACATCTGATCTAATGCACTTGGAGCATCCTCATCTGGTAGATACCAAGTTTAAGCGAATATTGGTTGAAGTAAAACATGGTGATTTTGGATGTTTTTATTTATCTGAGAATCTTGATGAACCTGCGGACTCTAAGCGGCCTGCCAAAAAAACTGACTGGGAAGACTATTTGTATGGACTACCTCAGCCTCTACCAGATGCCCTTCATCAACATACTGCAGTAGATGGTGCTTTAAACTTGTACAACAACCAAAACTTTTGCTTTCACCTTGATCCGACTGTGAATGCAGCTAATGACCAATGCATAAACCCTGAAGGCTTTGCCAGTTTTATTGGTCTTCTTGAATCGATTCCTTTACCCGATACTGGTTCAAATAATGGGTCTTCTGATTACTCAATACCTGATTTGAGGTATGTATTAAGGAAGAATTTTGGTCGTGGATCATATGGTGAAGTATGGTTGGCTTTTCATTGGAATTGTAATCAAGACAATAATGCTGAGAAAATGAGCAAGGATGAGAATAATAGAAACAGCAGCTCAACTACTCCTGATTGTCAAGATGGTCCATCTAACTACACCCTGTACATTTTGAAACGTATAATGGTAGAGAGAGGGTCTGCTGTTTACTTAAGCGGGCTGAGGGAGAAGTATTTTGGAGAAATTTTCTTAAATGCCTCTACATGCTTTGAAGATCTGCTGTCAGCTGGAAAACCGAACTGTGTCATGGAAACATCACAATTTGGGTCCGAGAATTCATTTCCAAACAAATTTCGACTGCAAAAAGCCACATATGAAGAAGGTTTGAACCATATCGCAAGATATGTGGAGTCTTTTGAGTCTCGATCCAATGAAATATGGCTTGTATTCAGTTTTGAAGGAGTGTCATTGTCAAAACTTTTATATACTGTGGAAGATGCATCTGATACTTCTGAAAAAGAAAGACTTGAGCAAGTAAAAGTTCAAATACTACGTCCATCAAATTGGTGGCATTGGTTGAAAACAACAGAAGAAGGGCAAGAGGAAATGCGCAAACTTATCTGGCAGCTGTTATTGGCACTTAAGTCTTGTCACGATCGCAATATCACACACAGGGACATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAGACGGGGAGATGCTTGAAAGAGATTCCAACAAAAATTAATAAATCTTCAACCAAAATGCGTATTATTGACTTTGGAAGTGGAATTGATGAATTCACATTAAAGCATTTATATGGTTCTACTGGGCCTTCTAGAGCTGAACAAACTTATGAGTATACACCTCCTGAAGCTTTGCTGAATGCTACATGGTATCAAGGGCCAACAAGCTCAACTTTGAAATATGACATGTGGAGCGTTGGTGTTGTGATGTTAGAGTTGGTCCTAGGGACACCAAATGTTTTCCAGATAAATGCTTTAACACGTGCTCTTTTGGACCGGCATCTTGACGGATGGAATGAGGGTGTGAAGGAGCTGGCATACAAACTTAGATCATTCATGGAATTGTGCATCTTAATCCCTGGGATTTCTGGCAGTTCATCCAAAAAATATCACACAGTGAATCAAGTTGGAGTTTCACCCGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTCATCAAATTAAGACTAGAGATCCTCTTAAAATGGGTTTTCCAAACATCTGGGCTTTACGGTTAGTACGCCAGCTGTTACTCTGGGACCCAGTAAGTTTCCCGATTATATTGATTTCTTGTCATTTTGGTGATCGCTTTAGCTTCTTACTTTCAAAACAGATTAATTTTAGAAACTATCTAAATTGTCTCCCATCCTGGTCTTATCAAAAAAATTTGATTGCCCTATGTGCGACCAGTGTCTTACACTGA 3321 0.4167 MKTTKISISSQHLLLALGFLFSATIPFAHGESSTCLTVYKNGGAPAVFQSPKCPRWKLSDYDSPPKTTARCQSAVLQGRRNSQEDRTLCVLDLRIPFPSAVGIKEVVVGIMAVFDGHNGAEASEMASKLLVEYFVLHTYFLLDATYSVVSKTSTGTLLNKRDPDHVNILRRWKEILGWQWHELHPERFQNTFSADFDDTFHLEILKEALLRAIHDIDAKFSEEAFRNSLHSGSTATVVLVADDKILVANIGDSKAFLCSENFQSPREAKASLLKLYRQKEYEGSVSVWDREKYRLASSHGLTHFAVKELTSDHHPDRDDERIRVESSGGQVLNWGGLPRVNGQLAITRAIGDVFFKSYGVISTPEVTDWQPLTANDSYLVAASDGVFEKMSVQDVCDLLWEIHRYSSMRSECTPSSSYSLADFIVNNAFKKGSMDNMAAVVVPLESAKSSANSPRSYTEKRDSGFPLFGLQDPASRSSANDITSDLMHLEHPHLVDTKFKRILVEVKHGDFGCFYLSENLDEPADSKRPAKKTDWEDYLYGLPQPLPDALHQHTAVDGALNLYNNQNFCFHLDPTVNAANDQCINPEGFASFIGLLESIPLPDTGSNNGSSDYSIPDLRYVLRKNFGRGSYGEVWLAFHWNCNQDNNAEKMSKDENNRNSSSTTPDCQDGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEIFLNASTCFEDLLSAGKPNCVMETSQFGSENSFPNKFRLQKATYEEGLNHIARYVESFESRSNEIWLVFSFEGVSLSKLLYTVEDASDTSEKERLEQVKVQILRPSNWWHWLKTTEEGQEEMRKLIWQLLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPTKINKSSTKMRIIDFGSGIDEFTLKHLYGSTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELVLGTPNVFQINALTRALLDRHLDGWNEGVKELAYKLRSFMELCILIPGISGSSSKKYHTVNQVGVSPASWKCSEEFFSHQIKTRDPLKMGFPNIWALRLVRQLLLWDPVSFPIILISCHFGDRFSFLLSKQINFRNYLNCLPSWSYQKNLIALCATSVLH. 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06023 1106 SMART serkin_6 620 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06023 1106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Seca7g06023 1106 Pfam Protein kinase domain 819 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06023 1106 SMART PP2C_4 62 442 IPR001932 -
Seca7g06023 1106 PANTHER PROTEIN PHOSPHATASE 64 443 IPR015655 GO:0004722|GO:0006470
Seca7g06023 1106 Pfam Protein phosphatase 2C 203 437 IPR001932 -
Seca7g06023 1106 MobiDBLite consensus disorder prediction 649 668 - -
Seca7g06023 1106 Gene3D Transferase(Phosphotransferase) domain 1 803 1056 - -
Seca7g06023 1106 ProSiteProfiles Protein kinase domain profile. 620 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06023 1106 ProSiteProfiles PPM-type phosphatase domain profile. 70 444 IPR001932 -
Seca7g06023 1106 SUPERFAMILY PP2C-like 68 445 IPR036457 -
Seca7g06023 1106 CDD PP2Cc 70 444 IPR001932 -
Seca7g06023 1106 Gene3D - 66 452 IPR036457 -
Seca7g06023 1106 SUPERFAMILY Protein kinase-like (PK-like) 619 990 IPR011009 -
Seca7g06023 1106 FunFam uncharacterized protein LOC106771884 isoform X8 809 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06023 Seca-Chr7 160462915 160483960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06023 684 1054 PP2C-type Phosphatase Gene Family AT3G63340 64.800 7.48e-164 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Seca7g06023 PP2C 4.8e-37 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06023 - - gmx:100781476 1853.18