Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06021 ATGAATTATATGTACTCAGTGAAAGAAGAATACTTGGAAGCATCAACATCATCATCATCATTCCAATCAGGAGGTGAATACCCACCAATGATTCCACCTCCCCAGCCAATGGAGGGACTTCATGAGATAGGACCCCCTCCATTCCTCACCAAAACGTTTGATGTGGTGGACGACCCAACTACCAACCATGTAGTTTCATGGAGCAGAGGTGGCACCAGCTTTGTAGTTTGGGATCCACATGCCTTCTCCACAACTCTCCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTAAGGCAACTAAACACGTATGGTTTTAGAAAAATTGATCCAGATAGATGGGAATTTGCAAATGAAGGATTCATCAGAGGGCACAGGCACCTTTTGAGGAACATAAGGAGAAGGAAAGCACCTTCTCAGCCTGCTCCTTCCCAACAAGCACAAGGTAGTCACTGTGCTGAAGTTGACCGTTTTGGACTTGATGAAGAAATTGAACGTTTGAGGCAGGAAAAACGGGTGTTGATGATGGAGCTAGTGAATCTTAGACAGCAGCAACAGAATAGCAGAGTGTGTCTTCAGGAGATGGAGCAAAGATTACATGGGATAGAAACCAAGCAGCAACAAATGATGTCATTCTTAGCTAGAGCAATGAAAAACCCTGCCTTTATCCATCAATTACTCCAACAGAAAGAGAATAGAAAGGAGCTTGAAGAAGCCATGACCAGAAAGAGAAGGCAAATTGAACTAGGCACTACAGGTATTGGACAATCAAGTAGTGAAGGTGAAGGAAGGAGCAGTGTTAAAGTTGAACCCTTAGAATTTGGTGATTATGAATTTGGGGTGTCAGAGTTGGAAATGCTAGCAATGGAAATGCAGGGTTTAGGAAGGGGGAGGAGAGAGCAGGAGGAAGGAGTAGAGGCACTAGAATCACAAGAGAGGATGGAAAGAGAATTTGATGAAGGGTTCTGGGAAGAATTACTGTTTAGTGAAAAAGTTGAGGGTCGATTAGACATTCCAACTGTTGAAGATAAAGATGAAGATGTCAATGTGTTGGTCAATCGCTTTGGTTGCTTGGATTCAAGTCATTAA 1095 0.4292 MNYMYSVKEEYLEASTSSSSFQSGGEYPPMIPPPQPMEGLHEIGPPPFLTKTFDVVDDPTTNHVVSWSRGGTSFVVWDPHAFSTTLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFIRGHRHLLRNIRRRKAPSQPAPSQQAQGSHCAEVDRFGLDEEIERLRQEKRVLMMELVNLRQQQQNSRVCLQEMEQRLHGIETKQQQMMSFLARAMKNPAFIHQLLQQKENRKELEEAMTRKRRQIELGTTGIGQSSSEGEGRSSVKVEPLEFGDYEFGVSELEMLAMEMQGLGRGRREQEEGVEALESQERMEREFDEGFWEELLFSEKVEGRLDIPTVEDKDEDVNVLVNRFGCLDSSH. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06021 364 Coils Coil 166 186 - -
Seca7g06021 364 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g06021 364 FunFam Heat shock transcription factor 1 41 138 - -
Seca7g06021 364 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g06021 364 Coils Coil 228 248 - -
Seca7g06021 364 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g06021 364 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g06021 364 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g06021 364 SUPERFAMILY "Winged helix" DNA-binding domain 44 137 IPR036390 -
Seca7g06021 364 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g06021 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 34 266 IPR027725 -
Seca7g06021 364 Gene3D - 41 138 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06021 Seca-Chr7 160420060 160423258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06021 28 363 HSF AT3G22830 51.902 1.15e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca7g06021 HSF_DNA-bind 3.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06021 K09419 - gmx:100794264 497.664