Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06020 ATGTTCCCTGCAGTTATGTCCAATTCTACTACTTCTTTATCTGAAGAAGCCACAAGAATTCATCAGGACTTGGACTTGGGTAGATTAAATCACCTTGTCTCAAACATTTCTCCTCAGCCTCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGTAACCCAGACCCAGATGCTGAAGTGATAGCCTTATCCCCAAAGACCCTTTTAGCTACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAATCTTCAGCTTCATAGGAGAGGCCATAACCTGCCTTGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTGAAAAAGAGAGCCTATGTTTGCCCTGAGCCTTCATGTGTTCACCACAACCCATCAAGGGCTTTAGGGGATCTTACAGGAATTAAGAAACACTATTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGAACCCTTTTTTCCAGGTATAATTCATTATAA 576 0.4184 MFPAVMSNSTTSLSEEATRIHQDLDLGRLNHLVSNISPQPPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYKCDCGTLFSRYNSL. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06020 191 FunFam protein indeterminate-domain 12-like 53 121 - -
Seca7g06020 191 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Seca7g06020 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Seca7g06020 191 Pfam Zinc-finger double-stranded RNA-binding 74 96 IPR022755 -
Seca7g06020 191 Gene3D Classic Zinc Finger 114 191 - -
Seca7g06020 191 MobiDBLite consensus disorder prediction 32 58 - -
Seca7g06020 191 Gene3D Classic Zinc Finger 74 113 - -
Seca7g06020 191 SMART c2h2final6 150 170 IPR013087 -
Seca7g06020 191 SMART c2h2final6 74 96 IPR013087 -
Seca7g06020 191 SMART c2h2final6 115 145 IPR013087 -
Seca7g06020 191 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Seca7g06020 191 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 190 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06020 Seca-Chr7 160399578 160403048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06020 2 191 IDZ Gene Family AT3G50700 72.105 2.75e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g06020 zf-C2H2_jaz 4.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06020 K25870 - cave:132171012 342.428