Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06000 ATGGCGAATCATCCTTCTGAGGCCCCCGCCGACGACTTCCTTGAGCAAATCCTGGGCCTACCGAATTTCGCTTCCGCCGATGGAACCGACGCTTCTTCCTTGGCCGCTCCGATGATGCTGCAGCTCAACTCCGGCGACACCGCCACCCACCTTGCCGCCGGAACTGGCTTTCATGCACCGGTCTACCAGTTGGGGCTGAGCTTGGACCAGGGCAAAGGAGGGTTCTTGAAGCCCGACGATGCTTCCGGGAGTGGCAAACGCTTCCGCGAGGATGTTGTTGATACCAGACCTAAGAATGCTTTTCATGGGCAACCCATGCCCACTACCATTCCTACTGCTCCACATCCACCAACAATGCGTCCTAGAGTGCGGGCTAGACGAGGACAGGCTACCGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCTAGTGTTAACAAGACAGATAGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTAATTTGTGTTCTTCATGGATTCCACATTTAATTTCATTTGATTTCTATCATTATTAG 609 0.5123 MANHPSEAPADDFLEQILGLPNFASADGTDASSLAAPMMLQLNSGDTATHLAAGTGFHAPVYQLGLSLDQGKGGFLKPDDASGSGKRFREDVVDTRPKNAFHGQPMPTTIPTAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVNLCSSWIPHLISFDFYHY. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06000 202 Pfam Helix-loop-helix DNA-binding domain 134 178 IPR011598 GO:0046983
Seca7g06000 202 MobiDBLite consensus disorder prediction 97 133 - -
Seca7g06000 202 SMART finulus 135 184 IPR011598 GO:0046983
Seca7g06000 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 184 IPR036638 GO:0046983
Seca7g06000 202 Gene3D - 124 185 IPR036638 GO:0046983
Seca7g06000 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Seca7g06000 202 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 184 - -
Seca7g06000 202 FunFam Basic helix-loop-helix transcription factor 124 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06000 Seca-Chr7 160067516 160072831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06000 8 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 63.731 3.62e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g06000 HLH 5.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06000 - - gmx:100793177 288.885