Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05998 ATGGAGAATTCATTGGGGACCTATGAAACAGAGCTGAATCTCAAGGCAACAGAGTTGAGGTTGGGGCTGCCTGGGAGCGATGAGCCGGAGAAACATTCATGCATTGTTAGAAGCAACAAGAGATCTTCACCAGAAGCCAGTGAGGAAGAGTCCATAAGCAACAGCAACGTGAATAATTCAAATATTGATGACCAAGACAATGTCCCGTATGCAAAGGCACAAGTAGTGGGATGGCCACCAATTAGATCTTTTAGGAAGAATAGTTTGCAACAGAAGAAGGAGGAACAAGGTGAAGGTGCTGGGATGTACGTGAAAGTGAGCATGGCGGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAAGAGCTACCCTGAACTCCTCAAGGCCTTGGAAAAAATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGATACAATGGATCTGAGTATGCTCCAACTTATGAAGACAAGGACGGTGACTGGATGTTGGTTGGAGACGTTCCATGGCACATGTTCATGTCCTCCTGCAAGAGGCTTAGAATTATGAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTTTGA 594 0.4478 MENSLGTYETELNLKATELRLGLPGSDEPEKHSCIVRSNKRSSPEASEEESISNSNVNNSNIDDQDNVPYAKAQVVGWPPIRSFRKNSLQQKKEEQGEGAGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALEKMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFMSSCKRLRIMKGSEAKGLGCF. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05998 197 MobiDBLite consensus disorder prediction 24 47 - -
Seca7g05998 197 MobiDBLite consensus disorder prediction 48 66 - -
Seca7g05998 197 SUPERFAMILY CAD & PB1 domains 97 187 - -
Seca7g05998 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 192 IPR003311 GO:0005634|GO:0006355
Seca7g05998 197 Pfam AUX/IAA family 37 195 IPR033389 -
Seca7g05998 197 FunFam Auxin-responsive protein 96 197 - -
Seca7g05998 197 MobiDBLite consensus disorder prediction 19 66 - -
Seca7g05998 197 Gene3D - 95 197 - -
Seca7g05998 197 ProSiteProfiles PB1 domain profile. 101 188 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05998 Seca-Chr7 160040653 160042573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05998 92 194 B3 DNA Binding Superfamily AT2G46530 37.864 1.74e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g05998 AUX_IAA 3.8e-60 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05998 K14484 - gmx:100780752 318.546