Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05997 ATGGAAGTAATTGGCCTCAAGGAGAAGAAGATGGTGTTTGAGGAAACTGAGCTCAGGCTAGGACTGCCTGGGAATGGATCAGCCAAAGCCACTACTGAAGCAGCAGCAGCAAGGAAGAGAGGATTCTCTGAAACTGAGTCTGACTCTGAGAATGAAACCATAACCACTGTGGATTTGAAGCTTAACCTCTCCCCAAAGGAAGCAGCTTCTTCTGCTGCGGTGGCAGATCCACCTCCTAAGGACAAGACCCTCCTGCTTTCCGATTCCGCCAAGCCTCCTGCTAAGGCGCAAGTGGTGGGTTGGCCACCGGTTCGGTCGCACCGGAAGAACATGTTTGCTGCAGCAGCCCAAAAGAGCAGCAGCGGATCAGGAGATCAGGAGAACAGCCCTAATGGATCGGGAAGTTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAACAGTTACCCTCAGCTCTCTGATGCATTAGGCAAAATGTTTAGCTCTTTTACCATTGGGAATTGCGAATCCCAAGGCATTAAGGATTTCATGAATGAGAGTAAGTTGATGGATCTGTTGAACAGCTCCGATTATGTCCCAACCTATGAAGACAAGGATGGCGACTGGATGCTTGTCGGTGATGTCCCGTGGGAGATGTTTGTTGAATCTTGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCTAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAG 759 0.4928 MEVIGLKEKKMVFEETELRLGLPGNGSAKATTEAAAARKRGFSETESDSENETITTVDLKLNLSPKEAASSAAVADPPPKDKTLLLSDSAKPPAKAQVVGWPPVRSHRKNMFAAAAQKSSSGSGDQENSPNGSGSFVKVSMDGAPYLRKVDLKMYNSYPQLSDALGKMFSSFTIGNCESQGIKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05997 252 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 239 IPR003311 GO:0005634|GO:0006355
Seca7g05997 252 FunFam Auxin-responsive protein 129 244 - -
Seca7g05997 252 Pfam AUX/IAA family 15 243 IPR033389 -
Seca7g05997 252 SUPERFAMILY CAD & PB1 domains 126 233 - -
Seca7g05997 252 MobiDBLite consensus disorder prediction 21 136 - -
Seca7g05997 252 MobiDBLite consensus disorder prediction 113 136 - -
Seca7g05997 252 ProSiteProfiles PB1 domain profile. 134 234 IPR000270 GO:0005515
Seca7g05997 252 Gene3D - 129 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05997 Seca-Chr7 160018989 160021397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05997 122 232 B3 DNA Binding Superfamily AT5G37020 34.234 3.25e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g05997 AUX_IAA 8.9e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05997 K14484 - gmx:100780214 363.229