Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05987 ATGAAAAGGCAGAGACTCATTATCCATTGTTACATTAAGTCTAGTAACATAATGCTTTTCGATGATGATGTTGCAAAGATTGCTGATTTTGATTTGTCAAATCAAGCCCCTGATGCAGCAGCACGACTTCATTCTACCCGTGTTCTTGGAACCTTTGGTTATCATGCTCCAGAGTATGCAATGAGTGGGCAGCTTACTTCAATAAGTGATGTTTACTGTTTTGGAGTTATATTGCTGGAACTCTTAACCGGACGTAAACATGTTGCTGTTGCTGGCCATTAA 282 0.3972 MKRQRLIIHCYIKSSNIMLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMSGQLTSISDVYCFGVILLELLTGRKHVAVAGH. 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05987 93 Gene3D Transferase(Phosphotransferase) domain 1 1 92 - -
Seca7g05987 93 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 88 - -
Seca7g05987 93 ProSiteProfiles Protein kinase domain profile. 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05987 93 Pfam Protein kinase domain 5 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05987 93 SUPERFAMILY Protein kinase-like (PK-like) 6 86 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05987 Seca-Chr7 159839810 159840331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05987 4 88 Receptor kinase-like Gene Family AT4G02010 58.824 1.34e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca7g05987 Pkinase 3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05987 K13436 - gmx:547595 150.599