Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05981 ATGGCGGATGTTGAAACAGATGTTGCACAAGCGGGAGTACCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGAGGGGTCGATCTCGATGCTCTCTTGGACATGTCCACCGATGAACTCGTCAAACTCTTCTCTGCTCGTGCCCGCAGAAGGTTTCAACGCGGTTTGACCCGCAAGCCTATGGCGCTAATCAAGAAGCTGCGTAAGGCGAAACGCGAGGCCCCACCCGGTGAGAAGCCAGAGCCAGTAAGGACACACCTCCGCAACATGATCATTGTGCCTGAGATGATTGGTAGCATCATCGGTGTCTACAATGGGAAGACCTTCAATCAAGTTGAAATTAAACCAGAAATGATTGGCCACTATCTAGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGAAGGCCTGGTATAGGTGCTACTCACTCCTCCAGGTTCATTCCTCTTAAGTGA 459 0.4967 MADVETDVAQAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05981 152 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 10 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g05981 152 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca7g05981 152 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g05981 152 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g05981 152 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g05981 152 NCBIfam 30S ribosomal protein S19 19 152 IPR005713 GO:0003735|GO:0006412|GO:0015935
Seca7g05981 152 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g05981 152 Gene3D 30s Ribosomal Protein S19; Chain A 8 152 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca7g05981 152 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Seca7g05981 152 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca7g05981 152 FunFam 40S ribosomal protein S15 9 152 - -
Seca7g05981 152 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05981 Seca-Chr7 159754719 159756632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05981 1 152 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.158 6.10e-94 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05981 K02958 - qsu:112027473 297.745