Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05980 ATGGCCACCACGGAAGAGCCAACTATCGCGGTTGAACCCGCACCCGAACCCACCATCGCCGAGCCACAACCCGAGGAGAAAGAGGAAGCCAAGCCTGAAGAGGCCAAAACCAGGAAAACCAAGGACCCCAAACCTAAGAAGGTTTCCAAACCACGGAACCCTTCTACTCATCCTTCATATGAAGAGATGATTAAGGATGCAATTGTGACGCTGAAGGAGAAATCGGGTTCGAGCCAATACGCGATTCAAAAATTCGCCGAAGAGAAGCACAAGCAGCTTCCTCCAAACTTCAGGAAGCTCTTGCTCTACCATTTGAAGAAGCAAGTTGCTTCTGGAAAGCTCGTCAAGGTTAAAGGTTCCTTTAAACTCTCGTCGGCGGCGTCCAAACCGTCTTCGGGAACTGCATCTGCACCGGCTAAGAAGAAGCCTGTGGCTGCCAAGCCCAAGTCCAAGCCCAAAGCCAAGGCTGCACCAGCTAAGGTTTCAAAGACAACCAAGGCTGCAGCGGTGAAGGCCAAGCCAGCTGCAAAGCCCAAGCCTAAAGCTGCGGCGAAGCCCAAGGCGGCTTCTAAGCCTAAAGCTGCTGCGGCGAAGCCCAAGCCCAAAGCTGCTGCCAAGCCGAAAACAGCTGTAAAACCTAAGCCCAAGCCCAAGCCGGCGAAGGCTGCAAGGACCTCGACCAGGACAACACCAGGGAAGAAAGTTGCCACCTCAAAGCCTGCACCGAAGAAAGCTCCGGCTGCAAAGAAAACTCCGGTAAAGAGCGTGAAGCCGAAGAGTGTAAAATCTCCGGCAAAGAAGGCTACACCAAAGAGAGGGGGAAGGAAGTGA 831 0.5355 MATTEEPTIAVEPAPEPTIAEPQPEEKEEAKPEEAKTRKTKDPKPKKVSKPRNPSTHPSYEEMIKDAIVTLKEKSGSSQYAIQKFAEEKHKQLPPNFRKLLLYHLKKQVASGKLVKVKGSFKLSSAASKPSSGTASAPAKKKPVAAKPKSKPKAKAAPAKVSKTTKAAAVKAKPAAKPKPKAAAKPKAASKPKAAAAKPKPKAAAKPKTAVKPKPKPKPAKAARTSTRTTPGKKVATSKPAPKKAPAAKKTPVKSVKPKSVKSPAKKATPKRGGRK. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05980 276 Gene3D - 52 133 IPR036388 -
Seca7g05980 276 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g05980 276 MobiDBLite consensus disorder prediction 1 64 - -
Seca7g05980 276 SUPERFAMILY "Winged helix" DNA-binding domain 53 132 IPR036390 -
Seca7g05980 276 MobiDBLite consensus disorder prediction 123 276 - -
Seca7g05980 276 MobiDBLite consensus disorder prediction 205 221 - -
Seca7g05980 276 FunFam Histone H1 51 136 - -
Seca7g05980 276 MobiDBLite consensus disorder prediction 260 276 - -
Seca7g05980 276 CDD H15 54 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g05980 276 PANTHER HISTONE H1 28 259 - -
Seca7g05980 276 MobiDBLite consensus disorder prediction 21 41 - -
Seca7g05980 276 PRINTS Histone H5 signature 203 222 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g05980 276 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g05980 276 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g05980 276 PRINTS Histone H5 signature 181 198 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g05980 276 PRINTS Histone H5 signature 147 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g05980 276 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g05980 276 Pfam linker histone H1 and H5 family 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05980 Seca-Chr7 159737481 159739255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05980 58 123 Single Myb Histone (SMH) Gene Family AT1G72740 34.848 2.97e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05980 K11275 - gmx:100795994 175.637