Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05979 ATGACTGACATATTTGAAAAGCAATCATCTCCTGAAGCTTCAAATTATGCATCAAGCAGTGGCATGTCTGGGGATGATAAGGAAATTGGTTATAGAGATGCAACATCAAAGCATAGATATCTTCTAGTCAACAACTCTCTTCTTCACTTGTTACCCATCAAAATTGACCTGAATTTCGCTCGCATGGTGATGGCAGAGGTGGTGGGTACTTTTATCTTGATGTTCTGTGTATGTGGAATAATTGCAAGCACACAATTCCAAAATGGTGCAGTGGGCCTTCTGGAGTATGCAGCTACAGCAGGATTAACAGTGATTGTGATAATTTTCTCTATAGGGCCAATATCTTGTGCCCATGTTAACCCAGCTGTCACAATAGCCTTTGCAACAATCGGTCAATTCCCATGGTGCAAGGTTCCAATTTACATAATAGCACAGACAATAGGTTCTATGTCGGCAACATATATCGGTAGCCTTGTCTATGGCATAAAATCAGATGTTATGATGACTCGGCCACTCCAAGGATGCAACTCTGCCTTCTGGGTGGAGTTTATTGCAACTTTCATCATCATGTTTCTGATTGCAGCTTTGACATCTGAGCCTCAATCAGTGGGCCATTTATCTGGCTTTGTTGCTGGAATTGCAATTGGGCTTGCTGTACTAATCACAGGCCCTGTCTCAGGTGGATCAATGAATCCTGCAAGATCATTAGGTCCAGCAATTCTCTCATTGAAATTTAAGGATATGTGGATATACATCCTAGCCCCCAGTGCTGGAGCTGTGGCAGGAGCTCTAATGTTTCGTTTCCTACGTCTTCGAGACCAACATTGTAGCAACACTATGTCCTCCCCAGACATTAGTGATGTTGTTCGTCCCATACCCTTTTGTGCAAAGTATAATGGCAAGCCGAGCTTCACACAGATCGTGGTGGCCTCCTCTATCGGGTTGATATTTGCTGCAGCAATGCATTATCGCTTGGTAAAAATGAGAGATCGAAAGATCATTCCACGTTTGAGATTATCTAAGGCAGGCCAAACGCCAAAGCTTGAGAGGTTCTCTCATTACGTAGCTAGGCAAATGGGGTTCAAAGATAGGAGGAATTGTCCACATCTATGTAAATTGGCTTCTGAATACATACGCAAATCTGACGGATGTGAAGATGATATCTACGCCTTCTTTGAGAATGAACCAAATGCTGATTCACTTTTTGTGAAGCTTGTGGAGGAGTTTGAGAGATGCATTCTTAGTTACTTTGCATTCCATTGGAGCTATGGTGACGTATTGATAAGTCAGGTATTGAGCTCTGACACTGAGCCAAAAAGAAAGCTCAAGCACCTAGTTATGGCGGCAACTAGAGAACAAAGGGTGGAGAGGGTAACCAAGAATCTGAAAGTGGCTAGAGTTTTTAATACATTAGTAGAAGAGATGAAAGCAATGGGACTTGTAACAACTGATGACAATCGATGCACAGAGGTGATGGCTCCAGTAGCTCACAGTGATAGGAGTCCAGTGCTCCTTTTCATGGGCGGTGGAATGGGAGCTGGCAAGAGCACTGTGCTTAAGGATATTCTCAAAGAACCTTTCTGGGCAGGAGCAGCAAGCAATGCTGTTATCATTGAGGCAGATGCCTTCAAAGAATCAGATGTTATCTATAAGGCCCTTAGTTCAAGAGGGCATCATGACATGATTCGAACAGCTGAACTGGTACACCAATCATCCACAGATGCAGCCTCATCCCTCCTGGTAACAGCACTAAATGAGGGGCGGGATGTAATTATGGATGGAACATTCTCCTGGTTGCCATTTGTTGTGCAGACAATAACAATGGCCAGAAATGTCCACCGCCGCCGTTACCGAATGGGAGCTGGCTACAAGGTGAATGAGGATGGAAGTGTTACTGAAAACTACTGGGAACGAATTGAAAATGAAGAACCTGAAAAAGTTGGAGGCAAAAAGAGAAAACCATATAGGATAGAGCTGGTTGGAGTTGTATGTGATGCTTACCTTGCAGTCATTAGAGGCATAAGGAGAGCTATCATGTGTAGAAGAGCAGTAAGAGTAAAGTCACAATTGAAATCCCATAAGAGATTTGCAGATGCATTCCTGACTTACTGTCAGCTAGTAGACAATGCTCGGCTATACAGTACAAATGCTTTGGAAGGTTCACCCAAGATAACTGTTGTGAAGTTGATAGGATGGAAAGACAGAGACAAGACACTGCTTGTTGATCCAGATGAAATCGATTGTTTGAATAGGGTTGCTAGGTTGAATGAAGATGCAGACTCCATATACGAACTTTACAAGCACCCCAACCCAACTTGTGAATCTGGATCTATATGGAAAGACATTGTATTATCTCCCTCAAGGTTGAACATCCAACAGGAGCTGAAGTATTCAATCCAAAAGGTTGAGAGATATTCAATCCAAAATGCTAATTTAGCGGGGCAGTGA 2448 0.4301 MTDIFEKQSSPEASNYASSSGMSGDDKEIGYRDATSKHRYLLVNNSLLHLLPIKIDLNFARMVMAEVVGTFILMFCVCGIIASTQFQNGAVGLLEYAATAGLTVIVIIFSIGPISCAHVNPAVTIAFATIGQFPWCKVPIYIIAQTIGSMSATYIGSLVYGIKSDVMMTRPLQGCNSAFWVEFIATFIIMFLIAALTSEPQSVGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAILSLKFKDMWIYILAPSAGAVAGALMFRFLRLRDQHCSNTMSSPDISDVVRPIPFCAKYNGKPSFTQIVVASSIGLIFAAAMHYRLVKMRDRKIIPRLRLSKAGQTPKLERFSHYVARQMGFKDRRNCPHLCKLASEYIRKSDGCEDDIYAFFENEPNADSLFVKLVEEFERCILSYFAFHWSYGDVLISQVLSSDTEPKRKLKHLVMAATREQRVERVTKNLKVARVFNTLVEEMKAMGLVTTDDNRCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAASNAVIIEADAFKESDVIYKALSSRGHHDMIRTAELVHQSSTDAASSLLVTALNEGRDVIMDGTFSWLPFVVQTITMARNVHRRRYRMGAGYKVNEDGSVTENYWERIENEEPEKVGGKKRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVKSQLKSHKRFADAFLTYCQLVDNARLYSTNALEGSPKITVVKLIGWKDRDKTLLVDPDEIDCLNRVARLNEDADSIYELYKHPNPTCESGSIWKDIVLSPSRLNIQQELKYSIQKVERYSIQNANLAGQ. 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05979 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 635 IPR027417 -
Seca7g05979 815 CDD MIP 61 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05979 815 Gene3D - 485 721 IPR027417 -
Seca7g05979 815 MobiDBLite consensus disorder prediction 1 22 - -
Seca7g05979 815 Pfam Major intrinsic protein 58 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05979 815 Gene3D Glycerol uptake facilitator protein. 49 282 IPR023271 -
Seca7g05979 815 PANTHER UNCHARACTERIZED 296 810 IPR044802 -
Seca7g05979 815 MobiDBLite consensus disorder prediction 1 25 - -
Seca7g05979 815 SUPERFAMILY Aquaporin-like 57 275 IPR023271 -
Seca7g05979 815 ProSitePatterns MIP family signature. 118 126 IPR022357 -
Seca7g05979 815 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05979 815 PRINTS Major intrinsic protein family signature 61 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05979 815 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05979 815 PRINTS Major intrinsic protein family signature 137 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05979 815 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05979 815 PRINTS Major intrinsic protein family signature 100 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g05979 815 Pfam Zeta toxin 496 608 IPR010488 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05979 Seca-Chr7 159727659 159736459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05979 20 292 Major Intrinsic Protein MIP AT4G10380 36.429 2.55e-49 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05979 - - aip:107634095 902.894