Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05959 ATGGAAGGAAACTATCTGAACAGAAACACTCATAGAGAGAACAGTTTGGGGTTTGAGGAGCATCCATGGGGAACTTCATGGCCAGCAAGGAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAGATCAGCTCAAGCTTTGGGAGGACACATGAATGTTCATAGGAGGGATAGGGCAAGATTAAGATCATCTTTATCTTCATGGGTCTCTGAGTGCCCTAAACCTAACCCTATAACCCCAACTCTTCTTTCATCACCATCTGATGAGGTTTTGAATTATGCACATCTTCCTTCTCCACTTTATAGTCCTTGTCTTTCTCTATCTTCTTCACCCTCCCCAGCTTCTACAAGTGAAGATAGGAAACCAACAAGACTCATCACATCTTCTCATCACTTTCCTCTTTTGAGTCCTCAAAGAAAGGAAATCATGATGATGAGTAGTAACAACACAGCAAGGAGAAATGCTGAGGAGGAGGAGGAGCACAAGGTTTTCAAGAATAATGAGCAAAACATTACTTTGGAGTTAGGAATAGGGTTGCTTAAACACCAAGAGGAGAAGTTAGATTTGGAGCTTCGACTTGGAAATTTCTAG 591 0.4179 MEGNYLNRNTHRENSLGFEEHPWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPITPTLLSSPSDEVLNYAHLPSPLYSPCLSLSSSPSPASTSEDRKPTRLITSSHHFPLLSPQRKEIMMMSSNNTARRNAEEEEEHKVFKNNEQNITLELGIGLLKHQEEKLDLELRLGNF. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05959 196 PANTHER OS07G0101800 PROTEIN 13 195 - -
Seca7g05959 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Seca7g05959 196 Pfam C2H2-type zinc finger 32 56 - -
Seca7g05959 196 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Seca7g05959 196 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Seca7g05959 196 Gene3D Classic Zinc Finger 18 73 - -
Seca7g05959 196 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05959 Seca-Chr7 159493096 159494418 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05959 3 194 C2H2 Transcription Factor Family AT3G23130 41.327 2.05e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g05959 zf-C2H2_6 5.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05959 - - gmx:102660985 251.906