Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05957 ATGGCCATTGTATTGGCCAATGGAGGGGGCAAGCCACCGGATTGGCAAGATTTCACTGGTATTGTTGTGTTGCTTATTATCAACTCAACCATCAGTTTCATTGAGGAAAACAATGCAGGCAATGCTGCAGCTGCTTTGATGGCTGGTCTTGCACCCAAAACCAAGGTTCTGAGGGATGGAAAATGGAGTGAGCAAGAGGCATCAATTTTGGTACCAGGAGATGTGATTAGCATCAAGTTGGGAGACATTGTCCCTGTTGATGCCCGTCTCTTGGAGGGTGATCCTCTCAAGATTGACCAATCTGCCCTCACTGGTGAGTCCTTGCCAGTCACAAGGCACCCCGGTAGTGAGGTCTTCTCTGGTTCCACTTGCAAACAAGGTGAGATTGAGGCAGTTGTCATTGCCACTGGTGTCCACACCTTCTTTGAAGCAGCAAAGGTAATCACTGAGGTGCATTTCTTGCCCTTCAATCCTGTGGACAAGCGCACAGCTATTACCTACATTGATAGCAATGGTGACTGGCACAGAAGCAGCAAAGGTGCTCCTAAGCAAATCATTGAGCTTTGTGCCCTCAAGGGAGAGACTTTGAAAAAAGGCCCACAATCCATAGGGAGGTTCAGTGGCATTAACTCAACAGCAGGATGA 645 0.4822 MAIVLANGGGKPPDWQDFTGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEASILVPGDVISIKLGDIVPVDARLLEGDPLKIDQSALTGESLPVTRHPGSEVFSGSTCKQGEIEAVVIATGVHTFFEAAKVITEVHFLPFNPVDKRTAITYIDSNGDWHRSSKGAPKQIIELCALKGETLKKGPQSIGRFSGINSTAG. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05957 214 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 141 190 IPR023299 GO:0000166
Seca7g05957 214 Gene3D - 147 197 IPR023299 GO:0000166
Seca7g05957 214 Pfam E1-E2 ATPase 51 144 - -
Seca7g05957 214 FunFam Plasma membrane ATPase 52 136 - -
Seca7g05957 214 SUPERFAMILY Calcium ATPase, transduction domain A 52 142 IPR008250 -
Seca7g05957 214 NCBIfam HAD-IC family P-type ATPase 21 143 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca7g05957 214 Gene3D - 14 144 - -
Seca7g05957 214 Gene3D - 52 136 - -
Seca7g05957 214 PANTHER CALCIUM-TRANSPORTING ATPASE 144 190 - -
Seca7g05957 214 SUPERFAMILY Calcium ATPase, transmembrane domain M 6 133 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05957 Seca-Chr7 159470784 159471944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05957 143 207 Primary Pumps ATPases AT3G42640 73.846 2.04e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05957 K01535 - csav:115724825 259.225