Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05956 ATGGAAGAATTCAGCTGCAGCTACCAAGAAGACTCCAACTCCAAGAGCTCAATTACTGAAGAAATCGATCGATCTGATCATGACATGGGAATTGGCAGATCCTATGAGTGTGTCTTTTGCAAGAGAGGCTTCACTACTGCACAAGCCTTAGGTGGACACATGAACATTCATAGAAAAGATAGAGCTGCAAACAAGACCACCAAAGCCAGTATTTTCCCTCCTTCAAGTTCAATTACCAAGCTTGATGATACTAACTATGCAGATCTTGGCTTCTATTCAGCAATTCCAAGAGGGAATAATTACTACAATACTACAACTGTTCCTGAGGTAGATCATGCTATTAATTACCATCAGATATATTTTCCTGGTGCTGTGGAAAACCAAAGGGATCGAAGTCAGTTCCTGTTTGGACAAGATTGGAGGCAGAAGGGTTTGAGCTTGTACACTAATCCATTGTGTGTACATGAAAATAATAAAGACAAGGTAGAAAACAACAGTGAAGAGGATGACCTGGATTTGGAGCTTAGACTTGGTCGTCATCCATAG 546 0.4084 MEEFSCSYQEDSNSKSSITEEIDRSDHDMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRAANKTTKASIFPPSSSITKLDDTNYADLGFYSAIPRGNNYYNTTTVPEVDHAINYHQIYFPGAVENQRDRSQFLFGQDWRQKGLSLYTNPLCVHENNKDKVENNSEEDDLDLELRLGRHP. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05956 181 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Seca7g05956 181 MobiDBLite consensus disorder prediction 1 22 - -
Seca7g05956 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Seca7g05956 181 PANTHER OS07G0101800 PROTEIN 11 180 - -
Seca7g05956 181 Pfam C2H2-type zinc finger 35 59 - -
Seca7g05956 181 Gene3D Classic Zinc Finger 8 85 - -
Seca7g05956 181 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Seca7g05956 181 MobiDBLite consensus disorder prediction 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05956 Seca-Chr7 159461660 159462205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05956 33 181 C2H2 Transcription Factor Family AT4G17810 28.477 5.34e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g05956 zf-C2H2_6 1.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05956 - - ccaj:109812060 193.741